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The map label for this gene is yiaN [C]

Identifier: 89053842

GI number: 89053842

Start: 1315332

End: 1316663

Strand: Direct

Name: yiaN [C]

Synonym: Jann_1351

Alternate gene names: 89053842

Gene position: 1315332-1316663 (Clockwise)

Preceding gene: 89053841

Following gene: 89053843

Centisome position: 30.46

GC content: 60.51

Gene sequence:

>1332_bases
ATGCTTTGGCAACAACTCCAACAACAAACTATTGAGCTTGGCTGGGATTTCTACGTCCCGATCATCGTCTTCGTGATCCT
CGTCGCCCTGGCCGTTCCGGTCTGGGCCTCCATCGGGGCGGCGGCGATCATCATGTTGATGATGTCCGGCGCTTTGCCCC
TGTCATTGGTCGGTGAAAGCCTGTTCCACGGCATTGACCACTTCGCCCTGACCGCCGTGCCGCTGTTTATTCTGACCGGT
GACGTGCTGGTCCGAACGGGGCTGTCGAAGAAGTTTCTTGATGTGGCCGAAGCCATCACCTGTTGGGCCAAGGGGGGCTT
CGGCTCGGCTACGGTTCTGGTCTGCGGCATGTTCGCCGCGATTTCGGGCTCGGACGCAGCGGGGGCCGCTGCCGTGGGTC
GCATGACCATCGCGCGATTGGTGGAATCCGGCTATCCGCGCCCCTATGCCTGTGCGCTGGTCGCCGCGGGCGCCTGCACC
GGTATCCTGATCCCGCCGTCGATTGCCTATATCGTCATCGGGCTGGTGCTGGGTGTGAACGTCTCCATCCTGTTTCTGGC
GGCTGTGATCCCCGGCACTTTGGTTCTGGGCGCGATCCTGTTGACCAACATCATTGTCAATCGCCGCCATGCCTATGAGG
GCGGCGGGTTGATGACCGCCGGTGAGTGGGCCGCGAACCTTTGGAAGACGATCAAGTCCGGTTGGTACGCGTTTCTGGTG
CCCGGCATCATCTTCTACGGTATCTTCTCTGGCCGTCTGACCCCGACCGAAGCCGGGGCCGTTGCCGTCGTGACCTGTAT
CGCCATCGGCTTCATTATCGGCACGCTGAAATTCAGCGACTTCCCCGCGATGCTGGTCAGTTCTGCCAAGGTGAACGGGG
TGATCCTGCCGATCATCGCCTTCTCCCTGCCACTGGCCCAAGCCCTCGCCATTCTTGGTGTGCCGCAGGGGTTTGTTGCC
GCCGCGACGGGTGTCAGCGATGATCCTCGTGTCTTGATCCTGATGATGATCCTGATCCTGATTGCGGCCGGTTGTGTGAT
GGAGACGACGCCCAATATCGTGATCCTGGCGCCGATCCTGTTCCCGCTGGCCCAGAACATCGGCATGAACGAGATCCAGT
TCTGCGTCATGATGATCACCGCGCTCGGCGTGGGCTTTATTACCCCGCCGCTTGGGCTCAACCTATTCGTGGTGTCGGGG
ATAACGGGGGAATCGATCCTCAAGATCGCAGCGCGCGCCGTGCCGTTTGTGGGCTTCATGCTGATCGTGACGCTGATGAT
TGCCTACATCCCCTGGATCTCAACGGCGCTTCTGCCTGATGTGTATCGCTAG

Upstream 100 bases:

>100_bases
CCTGAGGCTCATCCAATCCTTCCTGCGCGATGTCTCCGACCTTCGTAACGGCCGTGCCGTCTACGAAGGCGACAAGCTGT
TCGACTGAGGGGGCAGGCAC

Downstream 100 bases:

>100_bases
TTTGGAGCTGCCCCACGGCCCGTTTTTGAAAGGAGACCTGCAATGTACGACCACATTATCGTGCCAATGGCGCTGGATCA
TGGCTTTGGGGCAACGGCGC

Product: TRAP C4-dicarboxylate transport system permease DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MLWQQLQQQTIELGWDFYVPIIVFVILVALAVPVWASIGAAAIIMLMMSGALPLSLVGESLFHGIDHFALTAVPLFILTG
DVLVRTGLSKKFLDVAEAITCWAKGGFGSATVLVCGMFAAISGSDAAGAAAVGRMTIARLVESGYPRPYACALVAAGACT
GILIPPSIAYIVIGLVLGVNVSILFLAAVIPGTLVLGAILLTNIIVNRRHAYEGGGLMTAGEWAANLWKTIKSGWYAFLV
PGIIFYGIFSGRLTPTEAGAVAVVTCIAIGFIIGTLKFSDFPAMLVSSAKVNGVILPIIAFSLPLAQALAILGVPQGFVA
AATGVSDDPRVLILMMILILIAAGCVMETTPNIVILAPILFPLAQNIGMNEIQFCVMMITALGVGFITPPLGLNLFVVSG
ITGESILKIAARAVPFVGFMLIVTLMIAYIPWISTALLPDVYR

Sequences:

>Translated_443_residues
MLWQQLQQQTIELGWDFYVPIIVFVILVALAVPVWASIGAAAIIMLMMSGALPLSLVGESLFHGIDHFALTAVPLFILTG
DVLVRTGLSKKFLDVAEAITCWAKGGFGSATVLVCGMFAAISGSDAAGAAAVGRMTIARLVESGYPRPYACALVAAGACT
GILIPPSIAYIVIGLVLGVNVSILFLAAVIPGTLVLGAILLTNIIVNRRHAYEGGGLMTAGEWAANLWKTIKSGWYAFLV
PGIIFYGIFSGRLTPTEAGAVAVVTCIAIGFIIGTLKFSDFPAMLVSSAKVNGVILPIIAFSLPLAQALAILGVPQGFVA
AATGVSDDPRVLILMMILILIAAGCVMETTPNIVILAPILFPLAQNIGMNEIQFCVMMITALGVGFITPPLGLNLFVVSG
ITGESILKIAARAVPFVGFMLIVTLMIAYIPWISTALLPDVYR
>Mature_443_residues
MLWQQLQQQTIELGWDFYVPIIVFVILVALAVPVWASIGAAAIIMLMMSGALPLSLVGESLFHGIDHFALTAVPLFILTG
DVLVRTGLSKKFLDVAEAITCWAKGGFGSATVLVCGMFAAISGSDAAGAAAVGRMTIARLVESGYPRPYACALVAAGACT
GILIPPSIAYIVIGLVLGVNVSILFLAAVIPGTLVLGAILLTNIIVNRRHAYEGGGLMTAGEWAANLWKTIKSGWYAFLV
PGIIFYGIFSGRLTPTEAGAVAVVTCIAIGFIIGTLKFSDFPAMLVSSAKVNGVILPIIAFSLPLAQALAILGVPQGFVA
AATGVSDDPRVLILMMILILIAAGCVMETTPNIVILAPILFPLAQNIGMNEIQFCVMMITALGVGFITPPLGLNLFVVSG
ITGESILKIAARAVPFVGFMLIVTLMIAYIPWISTALLPDVYR

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=376, Percent_Identity=31.6489361702128, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46378; Mature: 46378

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]