Click here to switch to the map view.

The map label for this gene is 89053841

Identifier: 89053841

GI number: 89053841

Start: 1314804

End: 1315319

Strand: Direct

Name: 89053841

Synonym: Jann_1350

Alternate gene names: NA

Gene position: 1314804-1315319 (Clockwise)

Preceding gene: 89053840

Following gene: 89053842

Centisome position: 30.45

GC content: 55.81

Gene sequence:

>516_bases
ATGTCCAACTTTCTCAGTCACCTGAACAAAAACGCCGAACGTTGGCTGCTTTTGGTGTTCTACGTCATGCTTGTGGGGAC
CATGTTTATCGAGGTCGTGCGGCGCGAGGTCTTTGCCTATTCCTCCATTTGGGGGGAGGAGATGGTGCGCTATTCCTTCA
TCTACCTGGCCTGGGTCGGTGCGGCCTCGGCGGTGAAAGAGCGTGGGCACATCCGGATCGACGTGATCCTGAATTATGTA
CCGCCCACCGTGAAAACGCTGATCTACATCTTCGGCGACATCATCATGTTTGTCGTGGCCTGTATCGCGCTCTATTGGTC
ATGGGAGGCGGTGCATGTGTCGTGGAAATTCGGCTCCGTGACCCATGGCTTGCGCATCAGCCAAACCTTCTTCCTGTTCG
CCGTGCCGTTTGGTTTTGCCCTGGTCATCCTGAGGCTCATCCAATCCTTCCTGCGCGATGTCTCCGACCTTCGTAACGGC
CGTGCCGTCTACGAAGGCGACAAGCTGTTCGACTGA

Upstream 100 bases:

>100_bases
ATACCGGCGGGGCCCTTTTTCGGTCAAGACCGATCCAACACGCCAATGCCATTCCACCGCACGCCCGGCCCATGATTGCA
GGGCTGGCCAGGGGGTCCCC

Downstream 100 bases:

>100_bases
GGGGGCAGGCACATGCTTTGGCAACAACTCCAACAACAAACTATTGAGCTTGGCTGGGATTTCTACGTCCCGATCATCGT
CTTCGTGATCCTCGTCGCCC

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: Tripartite ATP-Independent Periplasmic Transporter DctQ; C4-Dicarboxylate Transport System; TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transport System Small Permease; C4-Dicarboxylate Transport System Permease Small Protein; TRAP Transporter DctMQ Subunit; TRAP Transporter Permease Component; TRAP Dicarboxylate Transporter DctQ Subunit

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSNFLSHLNKNAERWLLLVFYVMLVGTMFIEVVRREVFAYSSIWGEEMVRYSFIYLAWVGAASAVKERGHIRIDVILNYV
PPTVKTLIYIFGDIIMFVVACIALYWSWEAVHVSWKFGSVTHGLRISQTFFLFAVPFGFALVILRLIQSFLRDVSDLRNG
RAVYEGDKLFD

Sequences:

>Translated_171_residues
MSNFLSHLNKNAERWLLLVFYVMLVGTMFIEVVRREVFAYSSIWGEEMVRYSFIYLAWVGAASAVKERGHIRIDVILNYV
PPTVKTLIYIFGDIIMFVVACIALYWSWEAVHVSWKFGSVTHGLRISQTFFLFAVPFGFALVILRLIQSFLRDVSDLRNG
RAVYEGDKLFD
>Mature_170_residues
SNFLSHLNKNAERWLLLVFYVMLVGTMFIEVVRREVFAYSSIWGEEMVRYSFIYLAWVGAASAVKERGHIRIDVILNYVP
PTVKTLIYIFGDIIMFVVACIALYWSWEAVHVSWKFGSVTHGLRISQTFFLFAVPFGFALVILRLIQSFLRDVSDLRNGR
AVYEGDKLFD

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19834; Mature: 19702

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFLSHLNKNAERWLLLVFYVMLVGTMFIEVVRREVFAYSSIWGEEMVRYSFIYLAWVG
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASAVKERGHIRIDVILNYVPPTVKTLIYIFGDIIMFVVACIALYWSWEAVHVSWKFGSV
HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCH
THGLRISQTFFLFAVPFGFALVILRLIQSFLRDVSDLRNGRAVYEGDKLFD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
>Mature Secondary Structure 
SNFLSHLNKNAERWLLLVFYVMLVGTMFIEVVRREVFAYSSIWGEEMVRYSFIYLAWVG
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASAVKERGHIRIDVILNYVPPTVKTLIYIFGDIIMFVVACIALYWSWEAVHVSWKFGSV
HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCH
THGLRISQTFFLFAVPFGFALVILRLIQSFLRDVSDLRNGRAVYEGDKLFD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA