Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053811
Identifier: 89053811
GI number: 89053811
Start: 1284644
End: 1285189
Strand: Direct
Name: 89053811
Synonym: Jann_1320
Alternate gene names: NA
Gene position: 1284644-1285189 (Clockwise)
Preceding gene: 89053810
Following gene: 89053812
Centisome position: 29.75
GC content: 65.38
Gene sequence:
>546_bases ATGCTTCGCTCAACCCTTGCCGCTGCCGCCCTCCTCGCAACTCCGGCCATGGCCGAGATCGCAGGCGATCCCGTCACAGC TGACACTCTTCTTGACCGGACCGAGATGATCCGCATCGCCGACGCCCTTGACGCCGCCGTCGATGCGCAGGATTGGCCTG CTGCCCGCGCGCTCTTCACCGATGAGATCTATGTCGACTTCACGTCGCTGGTCGGGGGCGAACCCGCCACGATCCCGGCC GATGGCCTGATCGCCGGTTGGTCCGCCAATCTGACCGGAGAGAAGTCCAGCTTCCACCTGCGCGGCAACCACCGCATCTC CTTCGACGGCGCCGATGCGGCCCTGATGCAGAGCCACGGCTATGCCTGGAACCAGATGCCCTCGGGCGCACTGGAGGAGA ATGGCGGTAACCCGATGTGGGAAGTCTGGGGCACCTACACGCACAGCTTCACGCGTACCGAAGACGGCTGGCTCGTCTCT GCCATGACCTTCACCGCCACGGCCGAGCGCGGCAATGACTACGTCCGCAACACGCCGGGTAGCTGA
Upstream 100 bases:
>100_bases CGATCACTTCCGCGCAGGCACTGACGCCTGATCTGCCCCCTGGCGCGGGACTGCCCCGCGCCAGCCCCTCTCTCATAATC TTATACAAGGACACGCCGCC
Downstream 100 bases:
>100_bases TCTAATCCCCCCCATACACAAGGAACAGTTCAATGACACAGACATGGTTTATCACCGGCGCATCTTCCGGCTTCGGGGCT GCCTTCGCCCGCCACGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MLRSTLAAAALLATPAMAEIAGDPVTADTLLDRTEMIRIADALDAAVDAQDWPAARALFTDEIYVDFTSLVGGEPATIPA DGLIAGWSANLTGEKSSFHLRGNHRISFDGADAALMQSHGYAWNQMPSGALEENGGNPMWEVWGTYTHSFTRTEDGWLVS AMTFTATAERGNDYVRNTPGS
Sequences:
>Translated_181_residues MLRSTLAAAALLATPAMAEIAGDPVTADTLLDRTEMIRIADALDAAVDAQDWPAARALFTDEIYVDFTSLVGGEPATIPA DGLIAGWSANLTGEKSSFHLRGNHRISFDGADAALMQSHGYAWNQMPSGALEENGGNPMWEVWGTYTHSFTRTEDGWLVS AMTFTATAERGNDYVRNTPGS >Mature_181_residues MLRSTLAAAALLATPAMAEIAGDPVTADTLLDRTEMIRIADALDAAVDAQDWPAARALFTDEIYVDFTSLVGGEPATIPA DGLIAGWSANLTGEKSSFHLRGNHRISFDGADAALMQSHGYAWNQMPSGALEENGGNPMWEVWGTYTHSFTRTEDGWLVS AMTFTATAERGNDYVRNTPGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19369; Mature: 19369
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSTLAAAALLATPAMAEIAGDPVTADTLLDRTEMIRIADALDAAVDAQDWPAARALFT CCHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEC DEIYVDFTSLVGGEPATIPADGLIAGWSANLTGEKSSFHLRGNHRISFDGADAALMQSHG CHHEEEEHHHCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCC YAWNQMPSGALEENGGNPMWEVWGTYTHSFTRTEDGWLVSAMTFTATAERGNDYVRNTPG CCCCCCCCCCCCCCCCCEEEEEEECEECCEEECCCCEEEEEEEEEEECCCCCCCCCCCCC S C >Mature Secondary Structure MLRSTLAAAALLATPAMAEIAGDPVTADTLLDRTEMIRIADALDAAVDAQDWPAARALFT CCHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEC DEIYVDFTSLVGGEPATIPADGLIAGWSANLTGEKSSFHLRGNHRISFDGADAALMQSHG CHHEEEEHHHCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEECCCCHHHHHHCC YAWNQMPSGALEENGGNPMWEVWGTYTHSFTRTEDGWLVSAMTFTATAERGNDYVRNTPG CCCCCCCCCCCCCCCCCEEEEEEECEECCEEECCCCEEEEEEEEEEECCCCCCCCCCCCC S C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA