| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is ytxE [H]
Identifier: 89053531
GI number: 89053531
Start: 993242
End: 995641
Strand: Direct
Name: ytxE [H]
Synonym: Jann_1040
Alternate gene names: 89053531
Gene position: 993242-995641 (Clockwise)
Preceding gene: 89053530
Following gene: 89053534
Centisome position: 23.0
GC content: 64.29
Gene sequence:
>2400_bases ATGGCCTTTCACCGCAAAGCCAAACAGGGGATGTCCGGAGCCATCTGGCCCGGTTTTGTGGATGCCATCACGGCGCTGCT GATGGTGATGATTTTCGTGCTGACGATTTTCATGGTCATGCAATACGTCCTCTCGGAAGAGATCAGCACCCAAGACGATG AGCTGAATTCGCTGACGGCCCAGGTGAACCAATTGGCTGAGGCTTTGGGCCTTGAAGAAGCGCGGGCCGGGCAGTTGGAA TCCCGTGTCGCGACGCTGTCGGGGTCGTTGTCCGAGGCCGAAACCCAGGCCGCTGCGCAGGACGCATTGATCGCCAGTTT GACCGCCGAAAGTGCCGCGCAATCCGCCCGGATCGTGGCGTTCGAGGAACAGGTCGCGGGCCTTTTGGCCCAGAACTCCG AACTGGCAACAGGCCGGGCGGAAACGGAGGCCGAACTGGCCGAGGCAATGTCTCAGGCGGAGGCGTTGAACCTCGCCTTG GCCACGGCACGCTCGGAGATTGATGAAGCATCCGAGGCGGCGCGCCTGGCCGCTGCCCGCCGCGAGGCAATGGAGGCCCT GATCGCCGATCTGGAAGCCGAAAGCACGGCGCGCGACGCGTCCCTGTCCGATGCGCTGGCCGCATTGGCGACGTCTTCGT CTGAATTGGAGGCCCGCCAGACCGCTCTGACACAGGCCCTGACAGCCCTTGCAAGCGCCGAGACACGCAACGCGCAACTG GCTGGAACTTTGATTGAGCGGGACCGGTCCCTGTCCGATGCCCTTGCCGCTTTGGCCAGCGGTGACGAGCGGGCGGAGGA ACTTCTCGCGCGTCTTCAAGAGGTTGAGAGTGATTTGTCAGACGCGGACGTGGCACGCCTGGCTGAAGTGGCGGCAGCGG AAGCCCTGCGCGAACGTCTGGCCGGTGTCGAAGAAGATCTGACGCAGGAGGAGGCCGCGCGCCTTGCAGAACGCGCCGCC GCTGAAGCCTTGCGCGCCCGTCTGGGCGATGTGGAAACGGCGCTGTCCGAGGAAGAAGCCGCCCGTTTGGCTGAGGCTGC GGCGGCGGCCGCCTTGCGGACCCAATTGGGCGAAGCGACTGCTGCGCTGTCCGAGGAAGAGGCGGCGCGCCTTGCGGAAG CGGCGGCGGCGGAGGCCCTTCGTCAGCGTCTTGAAAACGCCGATGCCGAGTTGACGGCGATGTCACTGGCCCTCGAAGAA CAACGTCAGCGCGCCGAAGAAACGCTGACGTTGCTTGCGGCGGCTGATGCCGCGCGCGATGATCTGGCCACGCGACTGGC GGGCGCGTTGGCGCGTGCCGAAAGCGGGCAGGGGGAGGCCGCGTCGCTGGCCGATGCGCTTGCGGCGGCGGAGTTGCAGT TGGACCGTGCCGAGGCGGCGCTTTCAACCCAAACCACTGAAATGACGGATCTGGAGCGGCAGTTGGCACTCGTGCTGTCC CGTCTGGAAAGCGCGGAGGCCAGTGCCGCCGCCCGTGTCGCAGAATTGGAGGCGACGATTGCGGCCTCTGAAACGCAAGC CTCGGAAGCGGCGTCGGTGGCGTCTGATCTGACGGCTCTTGAGGCGCAATTGGCCGCCGCGCTCGCCGCCCGCCAGACAA CGGATGCCGCCTTGGCGGACGCATTAACGGAAGCAGAAACCCGCGAGACGCTTTTGGCGCAGGCCAATATTGAGCTTGCC GAGGCCGAGACGCAGTCCGAGCAAAGCGCGCGGCAGGTTGCGCTTTTGAATGAACAGGTTGCCGCGCTTCGGGCGCAGTT GGGATCCCTGCAATCGTTGCTCTCACTGTCGGAAGATCGCGATGAAGAGGCGCAGGTCCAGATTCAGGCGCTTGGCTCTC GCTTGAACACAGCGCTCGCGCAGCTTGCCGCGGAAGAGCGGACCCGTGCTGAACTGGAAGCGGCGGAGGTGGAGAGGCTG GCCGCTGAGGCCCAGGAACTGGAACGCTACCGGTCTGAATTCTTTGGCCGTTTGCGCGAGTTGTTGGAGGGCCGGGACGG TGTGCGGATCGAAGGCGACCGCTTCGTCTTTTCGTCTGAGGTGTTGTTTGAGGTTGGCTCCGCTGACTTGGCGACGGAAG GTCTGGCACAGATCGAAAACGTGGCAGCCCTCCTTCTGGAAATCGCGGTAGACATCCCCGAGGCAATTGACTGGATCATC CGCGTTGACGGTCATACCGACGACCAGCAGCTGCGCGAAGGCGCGACCTATGCCAATAATTGGGAGCTCAGCCAGGCGCG CGCGCTGGCTGTCGTGCTTTACATGAGCGAGGAACTGGGCATTCCGCCAAGGCGCCTGGCGGCTACCGGTTTCGGGGAAC ACCGCCCGATTGCGCCGAACGATACGGATGAAGGCCAGGCCGCCAATCGCCGGATTGAGTTAAAGCTGACCGAGCGTTGA
Upstream 100 bases:
>100_bases CGGGGATCTGGCGCATCTGACCGAAGCCTTGCAAGAACTGACCCGCGCCGCTCGCGCCCCGGCGCAGGCCCGGGTGCGCC AACGCGGGGACAGCTAGGCC
Downstream 100 bases:
>100_bases TATCGCGGAGATGTTGCACTTTTCGCAGACAAGTCGGTCTTTGACGCGATGCTTTTGGTTGGGCTAGGTATCGGACTTGT GTCGCGTCGACGGACTGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 799; Mature: 798
Protein sequence:
>799_residues MAFHRKAKQGMSGAIWPGFVDAITALLMVMIFVLTIFMVMQYVLSEEISTQDDELNSLTAQVNQLAEALGLEEARAGQLE SRVATLSGSLSEAETQAAAQDALIASLTAESAAQSARIVAFEEQVAGLLAQNSELATGRAETEAELAEAMSQAEALNLAL ATARSEIDEASEAARLAAARREAMEALIADLEAESTARDASLSDALAALATSSSELEARQTALTQALTALASAETRNAQL AGTLIERDRSLSDALAALASGDERAEELLARLQEVESDLSDADVARLAEVAAAEALRERLAGVEEDLTQEEAARLAERAA AEALRARLGDVETALSEEEAARLAEAAAAAALRTQLGEATAALSEEEAARLAEAAAAEALRQRLENADAELTAMSLALEE QRQRAEETLTLLAAADAARDDLATRLAGALARAESGQGEAASLADALAAAELQLDRAEAALSTQTTEMTDLERQLALVLS RLESAEASAAARVAELEATIAASETQASEAASVASDLTALEAQLAAALAARQTTDAALADALTEAETRETLLAQANIELA EAETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDRDEEAQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERL AAEAQELERYRSEFFGRLRELLEGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWII RVDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAATGFGEHRPIAPNDTDEGQAANRRIELKLTER
Sequences:
>Translated_799_residues MAFHRKAKQGMSGAIWPGFVDAITALLMVMIFVLTIFMVMQYVLSEEISTQDDELNSLTAQVNQLAEALGLEEARAGQLE SRVATLSGSLSEAETQAAAQDALIASLTAESAAQSARIVAFEEQVAGLLAQNSELATGRAETEAELAEAMSQAEALNLAL ATARSEIDEASEAARLAAARREAMEALIADLEAESTARDASLSDALAALATSSSELEARQTALTQALTALASAETRNAQL AGTLIERDRSLSDALAALASGDERAEELLARLQEVESDLSDADVARLAEVAAAEALRERLAGVEEDLTQEEAARLAERAA AEALRARLGDVETALSEEEAARLAEAAAAAALRTQLGEATAALSEEEAARLAEAAAAEALRQRLENADAELTAMSLALEE QRQRAEETLTLLAAADAARDDLATRLAGALARAESGQGEAASLADALAAAELQLDRAEAALSTQTTEMTDLERQLALVLS RLESAEASAAARVAELEATIAASETQASEAASVASDLTALEAQLAAALAARQTTDAALADALTEAETRETLLAQANIELA EAETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDRDEEAQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERL AAEAQELERYRSEFFGRLRELLEGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWII RVDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAATGFGEHRPIAPNDTDEGQAANRRIELKLTER >Mature_798_residues AFHRKAKQGMSGAIWPGFVDAITALLMVMIFVLTIFMVMQYVLSEEISTQDDELNSLTAQVNQLAEALGLEEARAGQLES RVATLSGSLSEAETQAAAQDALIASLTAESAAQSARIVAFEEQVAGLLAQNSELATGRAETEAELAEAMSQAEALNLALA TARSEIDEASEAARLAAARREAMEALIADLEAESTARDASLSDALAALATSSSELEARQTALTQALTALASAETRNAQLA GTLIERDRSLSDALAALASGDERAEELLARLQEVESDLSDADVARLAEVAAAEALRERLAGVEEDLTQEEAARLAERAAA EALRARLGDVETALSEEEAARLAEAAAAAALRTQLGEATAALSEEEAARLAEAAAAEALRQRLENADAELTAMSLALEEQ RQRAEETLTLLAAADAARDDLATRLAGALARAESGQGEAASLADALAAAELQLDRAEAALSTQTTEMTDLERQLALVLSR LESAEASAAARVAELEATIAASETQASEAASVASDLTALEAQLAAALAARQTTDAALADALTEAETRETLLAQANIELAE AETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDRDEEAQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERLA AEAQELERYRSEFFGRLRELLEGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWIIR VDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAATGFGEHRPIAPNDTDEGQAANRRIELKLTER
Specific function: May be involved in some transport function [H]
COG id: COG1360
COG function: function code N; Flagellar motor protein
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OmpA-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006665 [H]
Pfam domain/function: PF00691 OmpA [H]
EC number: NA
Molecular weight: Translated: 84608; Mature: 84477
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: PS51123 OMPA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFHRKAKQGMSGAIWPGFVDAITALLMVMIFVLTIFMVMQYVLSEEISTQDDELNSLTA CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH QVNQLAEALGLEEARAGQLESRVATLSGSLSEAETQAAAQDALIASLTAESAAQSARIVA HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE FEEQVAGLLAQNSELATGRAETEAELAEAMSQAEALNLALATARSEIDEASEAARLAAAR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REAMEALIADLEAESTARDASLSDALAALATSSSELEARQTALTQALTALASAETRNAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH AGTLIERDRSLSDALAALASGDERAEELLARLQEVESDLSDADVARLAEVAAAEALRERL HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH AGVEEDLTQEEAARLAERAAAEALRARLGDVETALSEEEAARLAEAAAAAALRTQLGEAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALSEEEAARLAEAAAAEALRQRLENADAELTAMSLALEEQRQRAEETLTLLAAADAARD HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLATRLAGALARAESGQGEAASLADALAAAELQLDRAEAALSTQTTEMTDLERQLALVLS HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH RLESAEASAAARVAELEATIAASETQASEAASVASDLTALEAQLAAALAARQTTDAALAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALTEAETRETLLAQANIELAEAETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDR HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DEEAQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERLAAEAQELERYRSEFFGRLRE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLEGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWII HHCCCCCCEECCCCEEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHE RVDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAATGFGEHRPIAPN EECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHEEHHHCCCCHHHHHHCCCCCCCCCCCC DTDEGQAANRRIELKLTER CCCCCCCCCCEEEEEECCC >Mature Secondary Structure AFHRKAKQGMSGAIWPGFVDAITALLMVMIFVLTIFMVMQYVLSEEISTQDDELNSLTA CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH QVNQLAEALGLEEARAGQLESRVATLSGSLSEAETQAAAQDALIASLTAESAAQSARIVA HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE FEEQVAGLLAQNSELATGRAETEAELAEAMSQAEALNLALATARSEIDEASEAARLAAAR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH REAMEALIADLEAESTARDASLSDALAALATSSSELEARQTALTQALTALASAETRNAQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH AGTLIERDRSLSDALAALASGDERAEELLARLQEVESDLSDADVARLAEVAAAEALRERL HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH AGVEEDLTQEEAARLAERAAAEALRARLGDVETALSEEEAARLAEAAAAAALRTQLGEAT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALSEEEAARLAEAAAAEALRQRLENADAELTAMSLALEEQRQRAEETLTLLAAADAARD HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLATRLAGALARAESGQGEAASLADALAAAELQLDRAEAALSTQTTEMTDLERQLALVLS HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH RLESAEASAAARVAELEATIAASETQASEAASVASDLTALEAQLAAALAARQTTDAALAD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALTEAETRETLLAQANIELAEAETQSEQSARQVALLNEQVAALRAQLGSLQSLLSLSEDR HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DEEAQVQIQALGSRLNTALAQLAAEERTRAELEAAEVERLAAEAQELERYRSEFFGRLRE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLEGRDGVRIEGDRFVFSSEVLFEVGSADLATEGLAQIENVAALLLEIAVDIPEAIDWII HHCCCCCCEECCCCEEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHE RVDGHTDDQQLREGATYANNWELSQARALAVVLYMSEELGIPPRRLAATGFGEHRPIAPN EECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHEEHHHCCCCHHHHHHCCCCCCCCCCCC DTDEGQAANRRIELKLTER CCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8200532 [H]