Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053404
Identifier: 89053404
GI number: 89053404
Start: 869325
End: 869747
Strand: Direct
Name: 89053404
Synonym: Jann_0913
Alternate gene names: NA
Gene position: 869325-869747 (Clockwise)
Preceding gene: 89053403
Following gene: 89053406
Centisome position: 20.13
GC content: 64.78
Gene sequence:
>423_bases ATGGTGCATCAATTTGCGATTGCCCTGATCGTGGGCGCCGCATTGCCCGGGCCGGTCGCTGCTCAAACTGATCCCTACGC GACCTTCCTGGAGGAGGTCGCCCAGGGCGATGGCGGCGCGTGCCGTCGCCTGATGGTTCAGCAGCGGGTCGACAATTGGT ACGGGCCGTCGGTGTCGGAGGCGTTCGCGTCGGTGGAAGAGATCATGGCCGACATCACCGGCGGGCCGGAGTTCCGGGAC ATCGGGTGCAACCGGGACTTTCGCGATGCCTTTGTCGACTGCTCCAGCATTGACGATCCGCGCTTGGCGCATATCGTCCC ACGCGGTGTCAGGGCCGCCACGATGCCTGAGCAGATCGCCCTGATGCGGGCGTGTCTGGACCTGGTGACGGCGACCGGAG AGAAACCCGGAAGTCTCCGTTAA
Upstream 100 bases:
>100_bases TACACCGCATTCCGGGGGCGGATGCCGGGAGTTGAAGCACTTCTGAAAGGGCGCGGTTTGGACCGGGTTGCCTGACCAAA ATCGCGCATGGGGTATATCA
Downstream 100 bases:
>100_bases TCGAAGACCTCGTCGGGATCGACGCCCCATAGCGCGCTGGCATCGACCCAGCCCGCGAAGCCGCCCACTTCCAGGCGGCA CCATCCCGGAATGCACTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 140
Protein sequence:
>140_residues MVHQFAIALIVGAALPGPVAAQTDPYATFLEEVAQGDGGACRRLMVQQRVDNWYGPSVSEAFASVEEIMADITGGPEFRD IGCNRDFRDAFVDCSSIDDPRLAHIVPRGVRAATMPEQIALMRACLDLVTATGEKPGSLR
Sequences:
>Translated_140_residues MVHQFAIALIVGAALPGPVAAQTDPYATFLEEVAQGDGGACRRLMVQQRVDNWYGPSVSEAFASVEEIMADITGGPEFRD IGCNRDFRDAFVDCSSIDDPRLAHIVPRGVRAATMPEQIALMRACLDLVTATGEKPGSLR >Mature_140_residues MVHQFAIALIVGAALPGPVAAQTDPYATFLEEVAQGDGGACRRLMVQQRVDNWYGPSVSEAFASVEEIMADITGGPEFRD IGCNRDFRDAFVDCSSIDDPRLAHIVPRGVRAATMPEQIALMRACLDLVTATGEKPGSLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15050; Mature: 15050
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHQFAIALIVGAALPGPVAAQTDPYATFLEEVAQGDGGACRRLMVQQRVDNWYGPSVSE CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHH AFASVEEIMADITGGPEFRDIGCNRDFRDAFVDCSSIDDPRLAHIVPRGVRAATMPEQIA HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHCCCCCHHCCHHHHH LMRACLDLVTATGEKPGSLR HHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MVHQFAIALIVGAALPGPVAAQTDPYATFLEEVAQGDGGACRRLMVQQRVDNWYGPSVSE CCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHH AFASVEEIMADITGGPEFRDIGCNRDFRDAFVDCSSIDDPRLAHIVPRGVRAATMPEQIA HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHCCCCCHHCCHHHHH LMRACLDLVTATGEKPGSLR HHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA