Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89053271
Identifier: 89053271
GI number: 89053271
Start: 739730
End: 740752
Strand: Direct
Name: 89053271
Synonym: Jann_0780
Alternate gene names: NA
Gene position: 739730-740752 (Clockwise)
Preceding gene: 89053262
Following gene: 89053275
Centisome position: 17.13
GC content: 64.42
Gene sequence:
>1023_bases ATGCCCACCGTCGTCGTCTACCGAATTAGCGCCGATCCCCTGGGCACCGCGGATGTCACAATCCTTGAAGAATATGTCGT GGATATCGTCGATGCGGACGATCCGCTTCTGGAAGGGTCCGACGCCACCGGCCCGCAGCTGGACGTGACCGATCTGCCCC CCGGGTTTTTGGGCGATTCCACCACATTTCAGACGTTTGAAACCTATAGCGGCTCGCTGGGGGGATCGACGGTATCGTTC ACGCTGATCCAGTTTTCCAACCCGGTGCTGATCATCGCGACCGCAGGCACGTTTGACGTGGGCGATACGATCACCGGCAC CGGCAGCACCATCGTGACCGCGCCGCCAACCGACTACGAGGATCTGCCGGATTACGTCTGTTTCACCGCGGGCTCATTGA TCGAGACCCCCTCTGGCCCCCGCCGGATCGAAAATTTGCAACGCGGTGATCTGGTCCTGACAGCCGAGGGGATGGCCAAG CCCGTGCAATGGATCGGCCAGCGCCACCTGAGTGCGCGGGACATTGCGCAAAGCCCGCATCTCAGCCCCGTGGTGATTGC CGCCGATGCCCTCGGGCCGGGGATGCCAGCGCGGGAGTTGCGCGTCTCTCCACAACACCGCCTCGCGCTCAGCACCGGGG CCAGTGGGATCGTGCTTGGGGCCGACGCGGTGCTGGCGGCGGCGTTGCACATGACGCCACGTGACAGGATCGACGTTGAA CCGATGCCGCGCGCCGTGGATTACGTGCATATCCTGCTGGACGGCCACGGGCTGGTGAAGGTGGAGGGCCTCTGGGCCGA GACGTTGTTTCTGGGCGAAATGGCGCTGCAAACCCTCTCGCGCGACGGGCTTGCGGAATTTGAGGCACTGTTTCCCGATA ATGACCTGTCCGCCGTGCCCGCCATGGCCACCTGCCTGCCGGTTATCACCAAGCATGAGGCCCGCGTGGCCATTGACGAT CTGCGCGCGTTCCGGCCGGATGCCATCGGGTCGGGCCACCCCAAACCCCCCTGGGCCGCGTGA
Upstream 100 bases:
>100_bases ACACGCAATCGGCACAGAATAGGCACAGTCTTCGGGTATTGTTATACTCCACCAGAGCCATCGATTCCTTGCCGCACCCT CAGGAACCACGGACAGATCC
Downstream 100 bases:
>100_bases CACCGCCCCGGCCTTGATCCTTGGGCGGGGCCCCTGCGCAGGTCCCTCAGTCCGCGTCCAGCGTCACGCCATCGGTCTCG ATCCCGTCGGCAACCTCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Type I Secretion Target Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; Peptidase Metallopeptidase; Collagen Triple Helix Repeat-Containing Protein; Collagen Triple Helix Repeat; Peroxidase; Bifunctional Hemolysin/Adenylate Cyclase
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MPTVVVYRISADPLGTADVTILEEYVVDIVDADDPLLEGSDATGPQLDVTDLPPGFLGDSTTFQTFETYSGSLGGSTVSF TLIQFSNPVLIIATAGTFDVGDTITGTGSTIVTAPPTDYEDLPDYVCFTAGSLIETPSGPRRIENLQRGDLVLTAEGMAK PVQWIGQRHLSARDIAQSPHLSPVVIAADALGPGMPARELRVSPQHRLALSTGASGIVLGADAVLAAALHMTPRDRIDVE PMPRAVDYVHILLDGHGLVKVEGLWAETLFLGEMALQTLSRDGLAEFEALFPDNDLSAVPAMATCLPVITKHEARVAIDD LRAFRPDAIGSGHPKPPWAA
Sequences:
>Translated_340_residues MPTVVVYRISADPLGTADVTILEEYVVDIVDADDPLLEGSDATGPQLDVTDLPPGFLGDSTTFQTFETYSGSLGGSTVSF TLIQFSNPVLIIATAGTFDVGDTITGTGSTIVTAPPTDYEDLPDYVCFTAGSLIETPSGPRRIENLQRGDLVLTAEGMAK PVQWIGQRHLSARDIAQSPHLSPVVIAADALGPGMPARELRVSPQHRLALSTGASGIVLGADAVLAAALHMTPRDRIDVE PMPRAVDYVHILLDGHGLVKVEGLWAETLFLGEMALQTLSRDGLAEFEALFPDNDLSAVPAMATCLPVITKHEARVAIDD LRAFRPDAIGSGHPKPPWAA >Mature_339_residues PTVVVYRISADPLGTADVTILEEYVVDIVDADDPLLEGSDATGPQLDVTDLPPGFLGDSTTFQTFETYSGSLGGSTVSFT LIQFSNPVLIIATAGTFDVGDTITGTGSTIVTAPPTDYEDLPDYVCFTAGSLIETPSGPRRIENLQRGDLVLTAEGMAKP VQWIGQRHLSARDIAQSPHLSPVVIAADALGPGMPARELRVSPQHRLALSTGASGIVLGADAVLAAALHMTPRDRIDVEP MPRAVDYVHILLDGHGLVKVEGLWAETLFLGEMALQTLSRDGLAEFEALFPDNDLSAVPAMATCLPVITKHEARVAIDDL RAFRPDAIGSGHPKPPWAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35996; Mature: 35865
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTVVVYRISADPLGTADVTILEEYVVDIVDADDPLLEGSDATGPQLDVTDLPPGFLGDS CCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC TTFQTFETYSGSLGGSTVSFTLIQFSNPVLIIATAGTFDVGDTITGTGSTIVTAPPTDYE CCEEEHHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCHH DLPDYVCFTAGSLIETPSGPRRIENLQRGDLVLTAEGMAKPVQWIGQRHLSARDIAQSPH HCCCCEECCCCCCEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHCCCC LSPVVIAADALGPGMPARELRVSPQHRLALSTGASGIVLGADAVLAAALHMTPRDRIDVE CCEEEEEECCCCCCCCHHHEECCCCCEEEEECCCCEEEECHHHHHHHHHHCCCCCCCCCC PMPRAVDYVHILLDGHGLVKVEGLWAETLFLGEMALQTLSRDGLAEFEALFPDNDLSAVP CCCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHH AMATCLPVITKHEARVAIDDLRAFRPDAIGSGHPKPPWAA HHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure PTVVVYRISADPLGTADVTILEEYVVDIVDADDPLLEGSDATGPQLDVTDLPPGFLGDS CEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC TTFQTFETYSGSLGGSTVSFTLIQFSNPVLIIATAGTFDVGDTITGTGSTIVTAPPTDYE CCEEEHHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCHH DLPDYVCFTAGSLIETPSGPRRIENLQRGDLVLTAEGMAKPVQWIGQRHLSARDIAQSPH HCCCCEECCCCCCEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHCCCC LSPVVIAADALGPGMPARELRVSPQHRLALSTGASGIVLGADAVLAAALHMTPRDRIDVE CCEEEEEECCCCCCCCHHHEECCCCCEEEEECCCCEEEECHHHHHHHHHHCCCCCCCCCC PMPRAVDYVHILLDGHGLVKVEGLWAETLFLGEMALQTLSRDGLAEFEALFPDNDLSAVP CCCCCEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHH AMATCLPVITKHEARVAIDDLRAFRPDAIGSGHPKPPWAA HHHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA