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The map label for this gene is rbcR [H]

Identifier: 89053220

GI number: 89053220

Start: 698865

End: 699755

Strand: Direct

Name: rbcR [H]

Synonym: Jann_0729

Alternate gene names: 89053220

Gene position: 698865-699755 (Clockwise)

Preceding gene: 89053215

Following gene: 89053222

Centisome position: 16.19

GC content: 59.48

Gene sequence:

>891_bases
ATGAATATCCGATCACTTCGCATTTTCGTCTATGTGATGGAGGAAGGCACCCTTGCACGGGCGGCTGATCGAATGCATCT
CAGCCAATCGGCGGCCAGCCGTCAGCTGGCAATGCTGGAGCAGGAGTTCGATGTCACTTTGTTCAGCCGGGACCAGAAGC
GGCTGATCCCGACACCGCAGGCGGAGGGATTTTATCCCGAAGCCCTCAACCTGTTGGCGCAGATTGACGAAATACCAGAA
ATTTTCCGCCGGATGCGAAAGGACGTGCGCGCGCCGCTGCGGATCGTGTCGCAAACCCGGCTCGCGAACGGGTTGGTTCT
GCCCGCGATTTGCGCATTCGCAAGGGACCACCCGGATCAAACGGTCAATCTGGAGATCATGTTGCGGCGGGATCTGGGCC
GCCGGATCATGCACCGGAAGTTCGATATTTGCGTATCGGCCCTACCACTGCCCGTGGAGAAGTTTGAACCGACGCGACTT
GGCGCGACGTCTTTGTGCATCGCCCTTCCGCGCGCGCATCCTTTGGCGACCCGATCCGTGATCGGGCCCAAAGACCTGCG
CGGCGTTCCCTATATCGCGCTGGACGAGTCCACTGTGTTGCGCCGGTTGATAGACCGACATGTCACCGATCTTGAGCGCC
CGACTTACGAAGTGTCAGTTGGTACGGCAGCCTATCGTCTGGTGTATCGCGGGCTCGGCTTCGCATTCGCCGATGCGGTT
TCGCTGGACCCTGAGCTGACGGACGGAATTGCCCTGGTGCCATGGGAGCAGGACCTGAGCATCGAGTATGGCTATTTCAC
CGCCGAGCGCGGGGACACCAATCAGTCAGCCCACGCGTTCGGGCAGATTTTGCAACAGCAGTTTCAGATGAAGTCCCACC
AAGCCGTGTAG

Upstream 100 bases:

>100_bases
GCCTGAATTGGGCGCTGATTTATCTGTCGCCCGACCCTAGCGAAGGTGCTAACATAGAAAAAACGCAATTATTGCATTCA
GAAATCGAATTGTTAGAACG

Downstream 100 bases:

>100_bases
GGTGAACGTTGACTGCGATCGCGAACCGCGTCGCACCCTGCCACACATTGGTTTCGCGGCAGAGCGGCCCTCGCCGGTCT
AGATCTGCGTCAAGCGCCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNIRSLRIFVYVMEEGTLARAADRMHLSQSAASRQLAMLEQEFDVTLFSRDQKRLIPTPQAEGFYPEALNLLAQIDEIPE
IFRRMRKDVRAPLRIVSQTRLANGLVLPAICAFARDHPDQTVNLEIMLRRDLGRRIMHRKFDICVSALPLPVEKFEPTRL
GATSLCIALPRAHPLATRSVIGPKDLRGVPYIALDESTVLRRLIDRHVTDLERPTYEVSVGTAAYRLVYRGLGFAFADAV
SLDPELTDGIALVPWEQDLSIEYGYFTAERGDTNQSAHAFGQILQQQFQMKSHQAV

Sequences:

>Translated_296_residues
MNIRSLRIFVYVMEEGTLARAADRMHLSQSAASRQLAMLEQEFDVTLFSRDQKRLIPTPQAEGFYPEALNLLAQIDEIPE
IFRRMRKDVRAPLRIVSQTRLANGLVLPAICAFARDHPDQTVNLEIMLRRDLGRRIMHRKFDICVSALPLPVEKFEPTRL
GATSLCIALPRAHPLATRSVIGPKDLRGVPYIALDESTVLRRLIDRHVTDLERPTYEVSVGTAAYRLVYRGLGFAFADAV
SLDPELTDGIALVPWEQDLSIEYGYFTAERGDTNQSAHAFGQILQQQFQMKSHQAV
>Mature_296_residues
MNIRSLRIFVYVMEEGTLARAADRMHLSQSAASRQLAMLEQEFDVTLFSRDQKRLIPTPQAEGFYPEALNLLAQIDEIPE
IFRRMRKDVRAPLRIVSQTRLANGLVLPAICAFARDHPDQTVNLEIMLRRDLGRRIMHRKFDICVSALPLPVEKFEPTRL
GATSLCIALPRAHPLATRSVIGPKDLRGVPYIALDESTVLRRLIDRHVTDLERPTYEVSVGTAAYRLVYRGLGFAFADAV
SLDPELTDGIALVPWEQDLSIEYGYFTAERGDTNQSAHAFGQILQQQFQMKSHQAV

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=245, Percent_Identity=26.1224489795918, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788481, Length=255, Percent_Identity=27.4509803921569, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693193, Length=165, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI157672245, Length=207, Percent_Identity=24.1545893719807, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=26.9035532994924, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=26.8774703557312, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33499; Mature: 33499

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRSLRIFVYVMEEGTLARAADRMHLSQSAASRQLAMLEQEFDVTLFSRDQKRLIPTPQ
CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCC
AEGFYPEALNLLAQIDEIPEIFRRMRKDVRAPLRIVSQTRLANGLVLPAICAFARDHPDQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
TVNLEIMLRRDLGRRIMHRKFDICVSALPLPVEKFEPTRLGATSLCIALPRAHPLATRSV
EEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHCCCCCCCCHHHCC
IGPKDLRGVPYIALDESTVLRRLIDRHVTDLERPTYEVSVGTAAYRLVYRGLGFAFADAV
CCCHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
SLDPELTDGIALVPWEQDLSIEYGYFTAERGDTNQSAHAFGQILQQQFQMKSHQAV
CCCCCCCCCEEEEECCCCCCEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIRSLRIFVYVMEEGTLARAADRMHLSQSAASRQLAMLEQEFDVTLFSRDQKRLIPTPQ
CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCC
AEGFYPEALNLLAQIDEIPEIFRRMRKDVRAPLRIVSQTRLANGLVLPAICAFARDHPDQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
TVNLEIMLRRDLGRRIMHRKFDICVSALPLPVEKFEPTRLGATSLCIALPRAHPLATRSV
EEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHCCCCCCCCHHHCC
IGPKDLRGVPYIALDESTVLRRLIDRHVTDLERPTYEVSVGTAAYRLVYRGLGFAFADAV
CCCHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
SLDPELTDGIALVPWEQDLSIEYGYFTAERGDTNQSAHAFGQILQQQFQMKSHQAV
CCCCCCCCCEEEEECCCCCCEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]