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The map label for this gene is ybeY [C]

Identifier: 89053194

GI number: 89053194

Start: 675181

End: 675663

Strand: Direct

Name: ybeY [C]

Synonym: Jann_0703

Alternate gene names: 89053194

Gene position: 675181-675663 (Clockwise)

Preceding gene: 89053193

Following gene: 89053195

Centisome position: 15.64

GC content: 61.9

Gene sequence:

>483_bases
ATGGAGATTGATATCCTGATCGACGCGCCGCACTGGGATGCGCTGGACCTCTGCGGTCTGGCTCAATCTGCCTGTGTGGC
CACGTTGACGGACCTGTCGCTGGACCCGGATGACTTTGCCCTGTCGATCCTGGCCTGTGACGATGCGCGCATCGCCACGC
TCAACACCCAGTTCCGAGGCAAGCCCACGCCCACAAATGTGCTCAGCTGGCCGTCGGAGGATCGCGCGCCCGAGACGCCG
GGGGCGATGCCGCATCTGTCTGATCTGGCGGCGGAACTTGGCGATCTGGCGCTCGCCTTTGAAACCTGTGCCCGGGAGGC
GGCGGACGGCGGCAAACCGCTGCCTGATCACATAAGCCATCTGATCGTGCATGGCCTGCTTCATTGCCTGGGATTTGACC
ATGAAACCGATGCAGACGCGGATCTTATGGAACGCCTTGAGACGCGCATACTTGCCAGACTGGGGGTCCCTGACCCATAT
TAG

Upstream 100 bases:

>100_bases
CGCTCCGGATACCCACAAAACCGTTTACCTGAAGGCGCTTTGACGCGTCAGGCGGCGCGCGACCCTTGTGCGCCGCCATT
CCCCTTCGGTATGGGGGCGG

Downstream 100 bases:

>100_bases
GGTCTACGGGCAATTTTGGCCCGGGTGATACCTTGGAAAGGAGCCATGAGCTCAAACCCTGATCCGTCGTCTTCTGCGGC
GCGTGGCGCGCCCCCTGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MEIDILIDAPHWDALDLCGLAQSACVATLTDLSLDPDDFALSILACDDARIATLNTQFRGKPTPTNVLSWPSEDRAPETP
GAMPHLSDLAAELGDLALAFETCAREAADGGKPLPDHISHLIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY

Sequences:

>Translated_160_residues
MEIDILIDAPHWDALDLCGLAQSACVATLTDLSLDPDDFALSILACDDARIATLNTQFRGKPTPTNVLSWPSEDRAPETP
GAMPHLSDLAAELGDLALAFETCAREAADGGKPLPDHISHLIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY
>Mature_160_residues
MEIDILIDAPHWDALDLCGLAQSACVATLTDLSLDPDDFALSILACDDARIATLNTQFRGKPTPTNVLSWPSEDRAPETP
GAMPHLSDLAAELGDLALAFETCAREAADGGKPLPDHISHLIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=124, Percent_Identity=43.5483870967742, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_JANSC (Q28UJ2)

Other databases:

- EMBL:   CP000264
- RefSeq:   YP_508645.1
- ProteinModelPortal:   Q28UJ2
- SMR:   Q28UJ2
- STRING:   Q28UJ2
- GeneID:   3933146
- GenomeReviews:   CP000264_GR
- KEGG:   jan:Jann_0703
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   EIYISID
- PhylomeDB:   Q28UJ2
- ProtClustDB:   CLSK935180
- BioCyc:   JSP290400:JANN_0703-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17233; Mature: 17233

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDILIDAPHWDALDLCGLAQSACVATLTDLSLDPDDFALSILACDDARIATLNTQFRG
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCEEEEECCCCCC
KPTPTNVLSWPSEDRAPETPGAMPHLSDLAAELGDLALAFETCAREAADGGKPLPDHISH
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEIDILIDAPHWDALDLCGLAQSACVATLTDLSLDPDDFALSILACDDARIATLNTQFRG
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCEEEEECCCCCC
KPTPTNVLSWPSEDRAPETPGAMPHLSDLAAELGDLALAFETCAREAADGGKPLPDHISH
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LIVHGLLHCLGFDHETDADADLMERLETRILARLGVPDPY
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA