Click here to switch to the map view.

The map label for this gene is ccmH [H]

Identifier: 88657788

GI number: 88657788

Start: 642494

End: 642898

Strand: Direct

Name: ccmH [H]

Synonym: ECH_0636

Alternate gene names: 88657788

Gene position: 642494-642898 (Clockwise)

Preceding gene: 88658373

Following gene: 88658096

Centisome position: 54.62

GC content: 25.19

Gene sequence:

>405_bases
ATGCAAATAAAAAGTAATTCAGTATTTATTACTATATTAGCATTCTCGTTTTTTTCCGTTTTTTCTGCCTACTCTTTTTC
AATAGATGAGAAATTAGTCAATAATGAAATGGAATTACGTGCAATTGATCTATTTAAAATAGTAAGGTGCTTAATTTGTT
CTGGTGAATCTATTTATGAATCACAATCACAATTAGCTTATGACATGCGCTTAATGATACGCAATAAAATCAAAAATGGC
TACAATGACAACCAAATAATTACTGAATTACGAAATTATTATGGAAATCAAATAACTATCCTACCTCCTTACAATCCATA
TACTTATCCATTATGGATATTACCTATTCTTATTTTTGGAATAGGAATAATTATAATAATAAAATTTATTTATTATAAAA
TATAG

Upstream 100 bases:

>100_bases
GTAAGTGAGACAGTTAATCCTTTTAATATTTTTATTTGCAAAGTTCCTTATGAGGAATTTATTAGTAAAATAAAAGCTAT
TACAAACACTATGGATAACC

Downstream 100 bases:

>100_bases
GATAATTCAAATAGTTATAGTTAATTATTAATTTATCATATTAAAACTAATAATATTAAAACCTATCTGCTGGCTAACTA
GCCATACCGCACTAAATGTA

Product: cytochrome c biogenesis family protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MQIKSNSVFITILAFSFFSVFSAYSFSIDEKLVNNEMELRAIDLFKIVRCLICSGESIYESQSQLAYDMRLMIRNKIKNG
YNDNQIITELRNYYGNQITILPPYNPYTYPLWILPILIFGIGIIIIIKFIYYKI

Sequences:

>Translated_134_residues
MQIKSNSVFITILAFSFFSVFSAYSFSIDEKLVNNEMELRAIDLFKIVRCLICSGESIYESQSQLAYDMRLMIRNKIKNG
YNDNQIITELRNYYGNQITILPPYNPYTYPLWILPILIFGIGIIIIIKFIYYKI
>Mature_134_residues
MQIKSNSVFITILAFSFFSVFSAYSFSIDEKLVNNEMELRAIDLFKIVRCLICSGESIYESQSQLAYDMRLMIRNKIKNG
YNDNQIITELRNYYGNQITILPPYNPYTYPLWILPILIFGIGIIIIIKFIYYKI

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15751; Mature: 15751

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKSNSVFITILAFSFFSVFSAYSFSIDEKLVNNEMELRAIDLFKIVRCLICSGESIYE
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
SQSQLAYDMRLMIRNKIKNGYNDNQIITELRNYYGNQITILPPYNPYTYPLWILPILIFG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH
IGIIIIIKFIYYKI
HHHHHHHHHHHHCC
>Mature Secondary Structure
MQIKSNSVFITILAFSFFSVFSAYSFSIDEKLVNNEMELRAIDLFKIVRCLICSGESIYE
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHH
SQSQLAYDMRLMIRNKIKNGYNDNQIITELRNYYGNQITILPPYNPYTYPLWILPILIFG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHH
IGIIIIIKFIYYKI
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]