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The map label for this gene is yrbE [C]

Identifier: 88607911

GI number: 88607911

Start: 3624

End: 4358

Strand: Direct

Name: yrbE [C]

Synonym: APH_0003

Alternate gene names: 88607911

Gene position: 3624-4358 (Clockwise)

Preceding gene: 88607073

Following gene: 88607015

Centisome position: 0.25

GC content: 44.63

Gene sequence:

>735_bases
GTGGGACTGCTCATCCCTGTAGGCAGGGTGGCTATTTTTTGTGTAAAGGCAGTCTTTCATAGTCTTGTACCGCCATACTA
TCTATGGATAACTACAAAGCAGTTTTTTGAGGTGTGGTTTTTCTCTCTTCCTATAGTAGCAGTTACATCTTTGTTTACGG
GAGGCGCGTTAGCCCTTCAGGATACCCTCGTGGGAAGCGCTAAAGTATCAGGCAATTTCATGGCTGGTATAGTTACTGTG
GCGATAGTCAGGGAGTTAGGACCTGTACTGCTAGGCCTTATAGTTGCTGGACGTATAGGGGCAGCTGTTGCGGCGGAGAT
AGGCACTATGCGCATTACAGAACAGATAGATGCGTTGACTACGTTAGATACTGATCCTTTTCATTATCTTATTGCACCGC
GGGTGATAGCTTTGGTATTGGCTATGCCGGTACTCATGATTTATGCCGATATTTTAGGAGTGTTTGGAGGCTTTGTTGTA
GGTACTTTGGGATTAGGCTATGGGCAGGAAGAGTATCTGGGAGGAGTAATGGAGTTTTTACTCCTGCAAGATGTAATAGA
GGGTCTGGTAAAAGCTGTATCGTTTGGGCTGGTAATTTCGCTAGTTGGGTGTTACAACGGGTATCACTGTGAGATAGGCG
CAAGGGGTGTAGGAACAGCGACAACAAAAACTTCGGTAGCAGCTTCTATGCTCATAATTTTGTTAAACTATATAATTACT
GTTTTTTACGCGTAG

Upstream 100 bases:

>100_bases
TGTAAGAACTTTAAAATCATTTTAAAGGAAGTAACTTATGAGGATGGAATTGTGTAAGAACATTCCCCTATTTTTTTTTG
CTGCTGTGGGCAGGTATTTT

Downstream 100 bases:

>100_bases
TGTAGTATGTACGCTGTATCTCTTTCAAATTTGCATGTCTCTTTCAACAACAAGGAGGTTTTGAAAGGTGTTGACTTGGA
CATAGCATGGGGGGATTCCC

Product: putative ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MGLLIPVGRVAIFCVKAVFHSLVPPYYLWITTKQFFEVWFFSLPIVAVTSLFTGGALALQDTLVGSAKVSGNFMAGIVTV
AIVRELGPVLLGLIVAGRIGAAVAAEIGTMRITEQIDALTTLDTDPFHYLIAPRVIALVLAMPVLMIYADILGVFGGFVV
GTLGLGYGQEEYLGGVMEFLLLQDVIEGLVKAVSFGLVISLVGCYNGYHCEIGARGVGTATTKTSVAASMLIILLNYIIT
VFYA

Sequences:

>Translated_244_residues
MGLLIPVGRVAIFCVKAVFHSLVPPYYLWITTKQFFEVWFFSLPIVAVTSLFTGGALALQDTLVGSAKVSGNFMAGIVTV
AIVRELGPVLLGLIVAGRIGAAVAAEIGTMRITEQIDALTTLDTDPFHYLIAPRVIALVLAMPVLMIYADILGVFGGFVV
GTLGLGYGQEEYLGGVMEFLLLQDVIEGLVKAVSFGLVISLVGCYNGYHCEIGARGVGTATTKTSVAASMLIILLNYIIT
VFYA
>Mature_243_residues
GLLIPVGRVAIFCVKAVFHSLVPPYYLWITTKQFFEVWFFSLPIVAVTSLFTGGALALQDTLVGSAKVSGNFMAGIVTVA
IVRELGPVLLGLIVAGRIGAAVAAEIGTMRITEQIDALTTLDTDPFHYLIAPRVIALVLAMPVLMIYADILGVFGGFVVG
TLGLGYGQEEYLGGVMEFLLLQDVIEGLVKAVSFGLVISLVGCYNGYHCEIGARGVGTATTKTSVAASMLIILLNYIITV
FYA

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=209, Percent_Identity=31.5789473684211, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 25902; Mature: 25771

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCC
>Mature Secondary Structure 
GLLIPVGRVAIFCVKAVFHSLVPPYYLWITTKQFFEVWFFSLPIVAVTSLFTGGALALQ
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
DTLVGSAKVSGNFMAGIVTVAIVRELGPVLLGLIVAGRIGAAVAAEIGTMRITEQIDALT
HHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLDTDPFHYLIAPRVIALVLAMPVLMIYADILGVFGGFVVGTLGLGYGQEEYLGGVMEFL
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLQDVIEGLVKAVSFGLVISLVGCYNGYHCEIGARGVGTATTKTSVAASMLIILLNYIIT
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
VFYA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA