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The map label for this gene is yfgC [C]

Identifier: 88607908

GI number: 88607908

Start: 203905

End: 205179

Strand: Direct

Name: yfgC [C]

Synonym: APH_0208

Alternate gene names: 88607908

Gene position: 203905-205179 (Clockwise)

Preceding gene: 88606866

Following gene: 88607197

Centisome position: 13.86

GC content: 41.8

Gene sequence:

>1275_bases
ATGAAGGTGTCTGTCGTTTTGTTGTGTTTGATGCTCATAATTCCTTCTGTTAGGTGTTCTGGCGGCATAGTATTCAGGGA
TAGTGAAATTGAAAACGTAATCAAAAAAATCAGCAAGCCTCTGTTTGCTGCGGCTCACGTGAATGTAGATGAGGTAAAGG
TCTTTGTTGTTGATGATAACAGGGTTAACGCGTTTGTTACCCCCGATAACTACGTCTTTATTCACAAAGGGTTGCTCAAA
TTCTCGAGGGATCCAGAAGTAGTTGTGGGAGTAATAGCGCATGAAATTGGTCACATGGCGCAGTACCACCTCATAAAACA
AGAGCGTGAACTACGTAATGAAATGATAGCAGAGGGTTTGGGTTATATTCTGGGTATGGTTACGTCTTTGGTACTTGATC
CTAAAATTGGCCATGCTATCATCGCAGGTAGTAGTACTGTCAGTCAGAGAAGTTTTTTAGCTTACAGTAGAACTCAGGAG
GAGATTGCTGACCAATGTGCATTGGAATATCTCGATGCTGCCGGCTATAGCCATGAAGGCCTGTTGCATGTATTGCGCTT
TTTCGGCCAACATGAGGCGCAGCATGTGTACTTAGATGAATACATGTCTACACACCCTTTAAGTGAACAGCGGTTAAGAA
AGCTATATGGGTACAAAAAGAAGCGGGAGGTTATAGGGTTTTCGGAAGAAGATAAGGCGAGTTTTGCGCGTATTGTTGAA
AAAGTAGAAGCATTTTTAATGCCTATAGACACTCTTAAAAATCGAGAACTGTCACCCTATATGCAATCTATAATTGACTA
TAGGGAAGCTAATGTAAAGGAGGCTATTCAGCGTTTGAATGTTCTGATAGATGCTGCGCCTACGGATCCGTATTTGAGGG
AAATTAGAGCGCAGATTTTATATAAACTTGGGGACGTAGAAGCGTGTATTACTGACTACAAAGCAGCTTTGAGTCAGATT
CCTGATGACATGTTGCTTAAGGTAGAGTTGGCCCAGGCCTTGGTTCTTAAAGATCCAGCACATGCATTGCCTTACCTCGA
ACAAGTTATGCGTGTGGAGAGGGATAATCCCTATGTGTGGAAACAGCTTTCGTTGGTCTATGGCAGAATGGGCAAAGTGC
CTATGTCTTACTTTGCGTTGGCGAATATGTATTTCCTTGAAGGAGATGAGAAAAGGTTTCTTGAGTACGTGAAATTATCG
AAAAAATACTTCGATAATAATAGCTTCCAGTTACGTATAATACAAGACCTTGAAGATGCTTACAGGGCAAGCTAA

Upstream 100 bases:

>100_bases
TCTTTGACTGCACAGTACTCAAGTTGTGAACAGACTGTTTATTATAGAGTATTTCAGTGTTTTTAACTATCATAGTTTTG
CAGAACCAAGGAGTACTAGT

Downstream 100 bases:

>100_bases
ACGCGGCCCTGAAGCATATGTCTAAACATTATTTACCACAAAGAGTACATCATGAAGCAAACGGTTTAATATGGAAACTT
ATGTGGAAGAAGGTCTTTTC

Product: M48 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MKVSVVLLCLMLIIPSVRCSGGIVFRDSEIENVIKKISKPLFAAAHVNVDEVKVFVVDDNRVNAFVTPDNYVFIHKGLLK
FSRDPEVVVGVIAHEIGHMAQYHLIKQERELRNEMIAEGLGYILGMVTSLVLDPKIGHAIIAGSSTVSQRSFLAYSRTQE
EIADQCALEYLDAAGYSHEGLLHVLRFFGQHEAQHVYLDEYMSTHPLSEQRLRKLYGYKKKREVIGFSEEDKASFARIVE
KVEAFLMPIDTLKNRELSPYMQSIIDYREANVKEAIQRLNVLIDAAPTDPYLREIRAQILYKLGDVEACITDYKAALSQI
PDDMLLKVELAQALVLKDPAHALPYLEQVMRVERDNPYVWKQLSLVYGRMGKVPMSYFALANMYFLEGDEKRFLEYVKLS
KKYFDNNSFQLRIIQDLEDAYRAS

Sequences:

>Translated_424_residues
MKVSVVLLCLMLIIPSVRCSGGIVFRDSEIENVIKKISKPLFAAAHVNVDEVKVFVVDDNRVNAFVTPDNYVFIHKGLLK
FSRDPEVVVGVIAHEIGHMAQYHLIKQERELRNEMIAEGLGYILGMVTSLVLDPKIGHAIIAGSSTVSQRSFLAYSRTQE
EIADQCALEYLDAAGYSHEGLLHVLRFFGQHEAQHVYLDEYMSTHPLSEQRLRKLYGYKKKREVIGFSEEDKASFARIVE
KVEAFLMPIDTLKNRELSPYMQSIIDYREANVKEAIQRLNVLIDAAPTDPYLREIRAQILYKLGDVEACITDYKAALSQI
PDDMLLKVELAQALVLKDPAHALPYLEQVMRVERDNPYVWKQLSLVYGRMGKVPMSYFALANMYFLEGDEKRFLEYVKLS
KKYFDNNSFQLRIIQDLEDAYRAS
>Mature_424_residues
MKVSVVLLCLMLIIPSVRCSGGIVFRDSEIENVIKKISKPLFAAAHVNVDEVKVFVVDDNRVNAFVTPDNYVFIHKGLLK
FSRDPEVVVGVIAHEIGHMAQYHLIKQERELRNEMIAEGLGYILGMVTSLVLDPKIGHAIIAGSSTVSQRSFLAYSRTQE
EIADQCALEYLDAAGYSHEGLLHVLRFFGQHEAQHVYLDEYMSTHPLSEQRLRKLYGYKKKREVIGFSEEDKASFARIVE
KVEAFLMPIDTLKNRELSPYMQSIIDYREANVKEAIQRLNVLIDAAPTDPYLREIRAQILYKLGDVEACITDYKAALSQI
PDDMLLKVELAQALVLKDPAHALPYLEQVMRVERDNPYVWKQLSLVYGRMGKVPMSYFALANMYFLEGDEKRFLEYVKLS
KKYFDNNSFQLRIIQDLEDAYRAS

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=160, Percent_Identity=24.375, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 48543; Mature: 48543

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSVVLLCLMLIIPSVRCSGGIVFRDSEIENVIKKISKPLFAAAHVNVDEVKVFVVDDN
CCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCHHHHHHCCCHHHEEEEEEECC
RVNAFVTPDNYVFIHKGLLKFSRDPEVVVGVIAHEIGHMAQYHLIKQERELRNEMIAEGL
CEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYILGMVTSLVLDPKIGHAIIAGSSTVSQRSFLAYSRTQEEIADQCALEYLDAAGYSHEG
HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLHVLRFFGQHEAQHVYLDEYMSTHPLSEQRLRKLYGYKKKREVIGFSEEDKASFARIVE
HHHHHHHHCCCCCCEEEHHHHHCCCCCCHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
KVEAFLMPIDTLKNRELSPYMQSIIDYREANVKEAIQRLNVLIDAAPTDPYLREIRAQIL
HHHHHHHCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHHHHHHHHHH
YKLGDVEACITDYKAALSQIPDDMLLKVELAQALVLKDPAHALPYLEQVMRVERDNPYVW
HHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
KQLSLVYGRMGKVPMSYFALANMYFLEGDEKRFLEYVKLSKKYFDNNSFQLRIIQDLEDA
HHHHHHHHCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
YRAS
HCCC
>Mature Secondary Structure
MKVSVVLLCLMLIIPSVRCSGGIVFRDSEIENVIKKISKPLFAAAHVNVDEVKVFVVDDN
CCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHCCHHHHHHCCCHHHEEEEEEECC
RVNAFVTPDNYVFIHKGLLKFSRDPEVVVGVIAHEIGHMAQYHLIKQERELRNEMIAEGL
CEEEEECCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYILGMVTSLVLDPKIGHAIIAGSSTVSQRSFLAYSRTQEEIADQCALEYLDAAGYSHEG
HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLHVLRFFGQHEAQHVYLDEYMSTHPLSEQRLRKLYGYKKKREVIGFSEEDKASFARIVE
HHHHHHHHCCCCCCEEEHHHHHCCCCCCHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
KVEAFLMPIDTLKNRELSPYMQSIIDYREANVKEAIQRLNVLIDAAPTDPYLREIRAQIL
HHHHHHHCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHEECCCCCHHHHHHHHHHH
YKLGDVEACITDYKAALSQIPDDMLLKVELAQALVLKDPAHALPYLEQVMRVERDNPYVW
HHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
KQLSLVYGRMGKVPMSYFALANMYFLEGDEKRFLEYVKLSKKYFDNNSFQLRIIQDLEDA
HHHHHHHHCCCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
YRAS
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]