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The map label for this gene is msp4 [H]

Identifier: 88607675

GI number: 88607675

Start: 1075449

End: 1076720

Strand: Reverse

Name: msp4 [H]

Synonym: APH_1017

Alternate gene names: 88607675

Gene position: 1076720-1075449 (Counterclockwise)

Preceding gene: 88607222

Following gene: 88606824

Centisome position: 73.18

GC content: 41.27

Gene sequence:

>1272_bases
ATGAAGCACGTTGTGTGTAAGAACTGCGTAGGATATGTGAAATGCTTCACGGTACGCTGTGCTTATAAGCGGGTATTATA
CATGGTATCAGCAATACTCTTGATGCTGATTATGGGTGAAGATGCCAAAGCGGTGGGTGATAGGGCTGTTCAGCCTAAAA
AGTTCTATGTGGCCTTGGATTATACTCCAGCTTTTAGCAAAGTCAGAGATTTTTACATAAGTGGGGATGAAAATTCTGCA
CTTGTAATGCCATATCCCAAGATTAAAGAGGAGGATGTCAGGGCACAGGGATGGGGAGTTGACTGGAATGCACCGAATCC
AAATATAGAGTTTGAAAGTAACGCTCTTATGTCTTGGGAAGGAAGTCTCGGATATAAGATTAAAGGCGGTAGGATAGAAA
TTGAAGTTGGGTATGAAAAATTCAGGGCGAGAGTTAGTCATGATTCAGGTGGTGAGATACATGATGCAGCGGTATATGTA
TTCATGCCACCTAGAGCATTGCCATATTTTGTGCTAAGGGGTTCGAGTGAGAGGTTAAAGTCAGAATTGTCCAGTGTTAC
GGAGGAGGAAATATTAACTTTTGCCAAGGGGCTTGCCGATCAACGGCCTGATATTAATAGGAAGATTTGTTATAAGGCGA
GAGTAGGAGGAACAAACTCACATAATCCCCATGTGAGAGCTGCATGTCAGGATAGTACATTAGGTAAGTACGTAGGAGGT
CTTTATGCCTTTTTAAAAGGAGCTATAGAAGAACACTCTATTTGGATATCAGAAGGAAGTGGGGGAAGAGTTGCTAATGT
AAGTGATATGGTAAGTCATATAAGAGCACTCACTCCAGAAGAAAAAGAAGCACTTTCGGGAATTCTAGCGATAGCTACAG
GATATGGAAGAACTGTAGAAGTAAGCTCCATAACAACAACTTCCGTAATGGTTAATGCCTGCTATGATCGCAATATTAAG
AAGATGCAAGGCATAGAAGCATATGCGTGTATGGGTCTGGGTAGTAATTTAGTAGAGGTGGTAGATAAACACATCACGTA
TAAATTTGCGTATAGATTAAAGGCAGGGCTTAGCTATCAGATTTTGTCGGGAGTTTCAGCCTTTGTCGGTGGTTTTTACC
ATCATGTTATAGGAAATGGTGTTTACGATGAGCTGCCTTTGAAACGGATAGGAAAGGATTTTAGAAAGGCAGATCGTAAC
CAATACGAGGCTATAGCTAACTTTGATATGAGTTATATGGGTACTGAGTTTGGCGTTAGGTTCGCTTTTTGA

Upstream 100 bases:

>100_bases
CTTTGTGTACTGCATAAGTATTACCGAATTGAAGAAGTAGCTATTGTACCACTGTATTTGTGTGCGGTGTGTTATTCTAG
TGTTTGTTGGGAGTAATGAC

Downstream 100 bases:

>100_bases
GGTGGAGCAGGGTAACTTCTCTTGTGCCCTGTTTCTATTCCCGAATGGGGGTAGAGATGTGTAAGAGTGAAGCTACTATA
GGACCCGCCAGTTTCCTGCC

Product: MSP2 family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MKHVVCKNCVGYVKCFTVRCAYKRVLYMVSAILLMLIMGEDAKAVGDRAVQPKKFYVALDYTPAFSKVRDFYISGDENSA
LVMPYPKIKEEDVRAQGWGVDWNAPNPNIEFESNALMSWEGSLGYKIKGGRIEIEVGYEKFRARVSHDSGGEIHDAAVYV
FMPPRALPYFVLRGSSERLKSELSSVTEEEILTFAKGLADQRPDINRKICYKARVGGTNSHNPHVRAACQDSTLGKYVGG
LYAFLKGAIEEHSIWISEGSGGRVANVSDMVSHIRALTPEEKEALSGILAIATGYGRTVEVSSITTTSVMVNACYDRNIK
KMQGIEAYACMGLGSNLVEVVDKHITYKFAYRLKAGLSYQILSGVSAFVGGFYHHVIGNGVYDELPLKRIGKDFRKADRN
QYEAIANFDMSYMGTEFGVRFAF

Sequences:

>Translated_423_residues
MKHVVCKNCVGYVKCFTVRCAYKRVLYMVSAILLMLIMGEDAKAVGDRAVQPKKFYVALDYTPAFSKVRDFYISGDENSA
LVMPYPKIKEEDVRAQGWGVDWNAPNPNIEFESNALMSWEGSLGYKIKGGRIEIEVGYEKFRARVSHDSGGEIHDAAVYV
FMPPRALPYFVLRGSSERLKSELSSVTEEEILTFAKGLADQRPDINRKICYKARVGGTNSHNPHVRAACQDSTLGKYVGG
LYAFLKGAIEEHSIWISEGSGGRVANVSDMVSHIRALTPEEKEALSGILAIATGYGRTVEVSSITTTSVMVNACYDRNIK
KMQGIEAYACMGLGSNLVEVVDKHITYKFAYRLKAGLSYQILSGVSAFVGGFYHHVIGNGVYDELPLKRIGKDFRKADRN
QYEAIANFDMSYMGTEFGVRFAF
>Mature_423_residues
MKHVVCKNCVGYVKCFTVRCAYKRVLYMVSAILLMLIMGEDAKAVGDRAVQPKKFYVALDYTPAFSKVRDFYISGDENSA
LVMPYPKIKEEDVRAQGWGVDWNAPNPNIEFESNALMSWEGSLGYKIKGGRIEIEVGYEKFRARVSHDSGGEIHDAAVYV
FMPPRALPYFVLRGSSERLKSELSSVTEEEILTFAKGLADQRPDINRKICYKARVGGTNSHNPHVRAACQDSTLGKYVGG
LYAFLKGAIEEHSIWISEGSGGRVANVSDMVSHIRALTPEEKEALSGILAIATGYGRTVEVSSITTTSVMVNACYDRNIK
KMQGIEAYACMGLGSNLVEVVDKHITYKFAYRLKAGLSYQILSGVSAFVGGFYHHVIGNGVYDELPLKRIGKDFRKADRN
QYEAIANFDMSYMGTEFGVRFAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 47002; Mature: 47002

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHVVCKNCVGYVKCFTVRCAYKRVLYMVSAILLMLIMGEDAKAVGDRAVQPKKFYVALD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEE
YTPAFSKVRDFYISGDENSALVMPYPKIKEEDVRAQGWGVDWNAPNPNIEFESNALMSWE
CCCHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEC
GSLGYKIKGGRIEIEVGYEKFRARVSHDSGGEIHDAAVYVFMPPRALPYFVLRGSSERLK
CCCCEEEECCEEEEEECHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCHHHHH
SELSSVTEEEILTFAKGLADQRPDINRKICYKARVGGTNSHNPHVRAACQDSTLGKYVGG
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHH
LYAFLKGAIEEHSIWISEGSGGRVANVSDMVSHIRALTPEEKEALSGILAIATGYGRTVE
HHHHHHHHHHHCEEEEECCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCEEE
VSSITTTSVMVNACYDRNIKKMQGIEAYACMGLGSNLVEVVDKHITYKFAYRLKAGLSYQ
ECCEEEHHHHEEHHHCCCHHHHCCCCCEEECCCCCHHHHHHHHHHHEEEEEEHHCCCCHH
ILSGVSAFVGGFYHHVIGNGVYDELPLKRIGKDFRKADRNQYEAIANFDMSYMGTEFGVR
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHCCHHCCEE
FAF
ECC
>Mature Secondary Structure
MKHVVCKNCVGYVKCFTVRCAYKRVLYMVSAILLMLIMGEDAKAVGDRAVQPKKFYVALD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEEEEE
YTPAFSKVRDFYISGDENSALVMPYPKIKEEDVRAQGWGVDWNAPNPNIEFESNALMSWE
CCCHHHHHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEC
GSLGYKIKGGRIEIEVGYEKFRARVSHDSGGEIHDAAVYVFMPPRALPYFVLRGSSERLK
CCCCEEEECCEEEEEECHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCHHHHH
SELSSVTEEEILTFAKGLADQRPDINRKICYKARVGGTNSHNPHVRAACQDSTLGKYVGG
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHH
LYAFLKGAIEEHSIWISEGSGGRVANVSDMVSHIRALTPEEKEALSGILAIATGYGRTVE
HHHHHHHHHHHCEEEEECCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHEECCCCCEEE
VSSITTTSVMVNACYDRNIKKMQGIEAYACMGLGSNLVEVVDKHITYKFAYRLKAGLSYQ
ECCEEEHHHHEEHHHCCCHHHHCCCCCEEECCCCCHHHHHHHHHHHEEEEEEHHCCCCHH
ILSGVSAFVGGFYHHVIGNGVYDELPLKRIGKDFRKADRNQYEAIANFDMSYMGTEFGVR
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHCCHHCCEE
FAF
ECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]