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The map label for this gene is cycM [H]

Identifier: 88607613

GI number: 88607613

Start: 180220

End: 180744

Strand: Reverse

Name: cycM [H]

Synonym: APH_0180

Alternate gene names: 88607613

Gene position: 180744-180220 (Counterclockwise)

Preceding gene: 88606904

Following gene: 88607058

Centisome position: 12.28

GC content: 47.24

Gene sequence:

>525_bases
GTGGGTGGCTATAATTTAAATAGGCTTGCTACTGCCATCCTTTTTGCGTCTTTCATCGTCCTTGTTGTGAGCAATGTGGT
GGACCTTGTGTACCATCCCGACTATAGCGGACCTCGTGGATACAGTGTAGATGTACCCACAACGCAGTCTGCAGGTAGCG
TGCCTGGAGCTGTTGCACCTATTGTCGATATTGCTGCACTCATGGAAAATGCAAGTGCCGAGAAGGGTAAGGCGGTTGCT
AAAAAGTGTTCCGCTTGTCATACTTTCAACAAGGGCGGTCCTCACAGGGTGGGTCCTAATTTATGGGGCGTAGTTGGCTC
GAAGCAAGCCCGTGCTCAAGATTTCCCTTATTCTAAGGCTTTATTGAGTAAGGGTGGTACTTGGAGTGAGGAAGAGCTGT
TTAAGTTTCTTGACAGCCCTAGAAATTACGCTAACGGTACTCGCATGGCATTTGCTGGACTGAAGCCTAAAGACATTGCG
GATGTATTGGCGTATTTTAAGTCTCTAGAAAAGGAAGGTACTTAA

Upstream 100 bases:

>100_bases
TTACTGCCTAGGATGGCTCAATCAGCACTATTTGTATTGACTTGATTTTACGATTGAACTAGCCTTTCTATAATGCAACA
GAGTTTTTAGACGGTTAGAG

Downstream 100 bases:

>100_bases
AAACTGGCATGTGCGCAGTGTTTTCTTCCTATCGTTGTAAGGAAGGTGTTCTATTGTGCAGTCGCGTGGGTTGTATATAA
AGTTGCTGTACCATGCAGTG

Product: cytochrome C, membrane-bound

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MGGYNLNRLATAILFASFIVLVVSNVVDLVYHPDYSGPRGYSVDVPTTQSAGSVPGAVAPIVDIAALMENASAEKGKAVA
KKCSACHTFNKGGPHRVGPNLWGVVGSKQARAQDFPYSKALLSKGGTWSEEELFKFLDSPRNYANGTRMAFAGLKPKDIA
DVLAYFKSLEKEGT

Sequences:

>Translated_174_residues
MGGYNLNRLATAILFASFIVLVVSNVVDLVYHPDYSGPRGYSVDVPTTQSAGSVPGAVAPIVDIAALMENASAEKGKAVA
KKCSACHTFNKGGPHRVGPNLWGVVGSKQARAQDFPYSKALLSKGGTWSEEELFKFLDSPRNYANGTRMAFAGLKPKDIA
DVLAYFKSLEKEGT
>Mature_173_residues
GGYNLNRLATAILFASFIVLVVSNVVDLVYHPDYSGPRGYSVDVPTTQSAGSVPGAVAPIVDIAALMENASAEKGKAVAK
KCSACHTFNKGGPHRVGPNLWGVVGSKQARAQDFPYSKALLSKGGTWSEEELFKFLDSPRNYANGTRMAFAGLKPKDIAD
VLAYFKSLEKEGT

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=104, Percent_Identity=43.2692307692308, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17539604, Length=96, Percent_Identity=41.6666666666667, Blast_Score=73, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17566554, Length=98, Percent_Identity=39.7959183673469, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322508, Length=99, Percent_Identity=43.4343434343434, Blast_Score=89, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320796, Length=98, Percent_Identity=40.8163265306122, Blast_Score=86, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=48, Blast_Score=100, Evalue=5e-22,
Organism=Drosophila melanogaster, GI17137204, Length=103, Percent_Identity=46.6019417475728, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 18543; Mature: 18412

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGYNLNRLATAILFASFIVLVVSNVVDLVYHPDYSGPRGYSVDVPTTQSAGSVPGAVAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
IVDIAALMENASAEKGKAVAKKCSACHTFNKGGPHRVGPNLWGVVGSKQARAQDFPYSKA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHCCCHHHH
LLSKGGTWSEEELFKFLDSPRNYANGTRMAFAGLKPKDIADVLAYFKSLEKEGT
HHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GGYNLNRLATAILFASFIVLVVSNVVDLVYHPDYSGPRGYSVDVPTTQSAGSVPGAVAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
IVDIAALMENASAEKGKAVAKKCSACHTFNKGGPHRVGPNLWGVVGSKQARAQDFPYSKA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHCCCHHHH
LLSKGGTWSEEELFKFLDSPRNYANGTRMAFAGLKPKDIADVLAYFKSLEKEGT
HHHCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]