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The map label for this gene is ygeR [C]

Identifier: 88607468

GI number: 88607468

Start: 218828

End: 219496

Strand: Reverse

Name: ygeR [C]

Synonym: APH_0221

Alternate gene names: 88607468

Gene position: 219496-218828 (Counterclockwise)

Preceding gene: 88607287

Following gene: 88607625

Centisome position: 14.92

GC content: 44.84

Gene sequence:

>669_bases
GTGCGGATAGCGGCGTCGTCGGTTTGCTTGTTTTTGTTGTGTGGGTGCCTGACGCAAAGTCCTGCTCCTGTCTCTATGAA
GGGAGAGAGGTTCTATGGAAGCACAGATAGCGATGAACACTTAGAATATCGTTTGACTAGAGATAATAGTACACCTACTG
GTAGATCTACTGCTAAACCTGGGCTGGTTCTCGTTGAAGATGCTTCTACTAGCAATATGGACCCTGTGGTATATGAGGCA
CGTCCTGGGTGCGATTTTTCCATGCCTTTGAATGGTAAGGTGGTTTCCATGCAGAGCTTTGGTAACACAGGTGGAGTGCG
CTGTGAAAGCGGAGTCGCAATAATTAGCAAGGGTGACATAGAGGTAACGGCATCATCTAGGGGAAAGGTAATGTATGTTG
GCAAAAACCTGAGAAAATACGGCAACCTGGTCATACTAGAGCACGACCGGTACACAATTACCATGTACTATAATCTTGAT
GAGATTGGAGTTAAAATTGGCGATTCCGTGAACAAGGGAGATGTTTTAGCTACGATTGCATCATCCTATGCTGGAGGAAA
AGCTCTTTCTGAAGGCAATACACCATTCTGCTGTTTTTCTATGCGTCATGATGGAAAGGAAGTAGATACAGTACAACACT
TAAAGCAATGCAAGTTGTCACAAAGGTAG

Upstream 100 bases:

>100_bases
CTTCTATTAGCATTAATTCCTCGCTATCTCGAAATAGTCATTCACAAAAATGTAATACTCCATTATGATACACGAGTTAT
TGTGTAATCAATAGACTAAT

Downstream 100 bases:

>100_bases
TGCGTGCACATATCTCAAGCCTGATATCTACCACATCTGCTGAAGTTTTACGTAAAATCGCGTCTCAAATACGCTAGCTT
GCCGTTAGTTGAGAGAGCAA

Product: putative lipoprotein NlpD

Products: NA

Alternate protein names: Lipoprotein NlpD; Peptidase M; Lipoprotein; M23/M37 Peptidase Domain-Containing Protein

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRIAASSVCLFLLCGCLTQSPAPVSMKGERFYGSTDSDEHLEYRLTRDNSTPTGRSTAKPGLVLVEDASTSNMDPVVYEA
RPGCDFSMPLNGKVVSMQSFGNTGGVRCESGVAIISKGDIEVTASSRGKVMYVGKNLRKYGNLVILEHDRYTITMYYNLD
EIGVKIGDSVNKGDVLATIASSYAGGKALSEGNTPFCCFSMRHDGKEVDTVQHLKQCKLSQR

Sequences:

>Translated_222_residues
MRIAASSVCLFLLCGCLTQSPAPVSMKGERFYGSTDSDEHLEYRLTRDNSTPTGRSTAKPGLVLVEDASTSNMDPVVYEA
RPGCDFSMPLNGKVVSMQSFGNTGGVRCESGVAIISKGDIEVTASSRGKVMYVGKNLRKYGNLVILEHDRYTITMYYNLD
EIGVKIGDSVNKGDVLATIASSYAGGKALSEGNTPFCCFSMRHDGKEVDTVQHLKQCKLSQR
>Mature_222_residues
MRIAASSVCLFLLCGCLTQSPAPVSMKGERFYGSTDSDEHLEYRLTRDNSTPTGRSTAKPGLVLVEDASTSNMDPVVYEA
RPGCDFSMPLNGKVVSMQSFGNTGGVRCESGVAIISKGDIEVTASSRGKVMYVGKNLRKYGNLVILEHDRYTITMYYNLD
EIGVKIGDSVNKGDVLATIASSYAGGKALSEGNTPFCCFSMRHDGKEVDTVQHLKQCKLSQR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Attached to the membrane by a lipid anchor (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=162, Percent_Identity=30.2469135802469, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24047; Mature: 24047

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAASSVCLFLLCGCLTQSPAPVSMKGERFYGSTDSDEHLEYRLTRDNSTPTGRSTAKP
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
GLVLVEDASTSNMDPVVYEARPGCDFSMPLNGKVVSMQSFGNTGGVRCESGVAIISKGDI
CEEEEECCCCCCCCCEEEECCCCCCEECCCCCEEEEEECCCCCCCEEECCCEEEEECCCE
EVTASSRGKVMYVGKNLRKYGNLVILEHDRYTITMYYNLDEIGVKIGDSVNKGDVLATIA
EEEECCCCEEEEECCCHHHHCCEEEEECCCEEEEEEEEHHHHCEEECCCCCCCCEEEEEH
SSYAGGKALSEGNTPFCCFSMRHDGKEVDTVQHLKQCKLSQR
HCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIAASSVCLFLLCGCLTQSPAPVSMKGERFYGSTDSDEHLEYRLTRDNSTPTGRSTAKP
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
GLVLVEDASTSNMDPVVYEARPGCDFSMPLNGKVVSMQSFGNTGGVRCESGVAIISKGDI
CEEEEECCCCCCCCCEEEECCCCCCEECCCCCEEEEEECCCCCCCEEECCCEEEEECCCE
EVTASSRGKVMYVGKNLRKYGNLVILEHDRYTITMYYNLDEIGVKIGDSVNKGDVLATIA
EEEECCCCEEEEECCCHHHHCCEEEEECCCEEEEEEEEHHHHCEEECCCCCCCCEEEEEH
SSYAGGKALSEGNTPFCCFSMRHDGKEVDTVQHLKQCKLSQR
HCCCCCCEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA