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The map label for this gene is pal [H]

Identifier: 88607299

GI number: 88607299

Start: 321980

End: 322597

Strand: Reverse

Name: pal [H]

Synonym: APH_0338

Alternate gene names: 88607299

Gene position: 322597-321980 (Counterclockwise)

Preceding gene: 88606834

Following gene: 88606829

Centisome position: 21.93

GC content: 47.09

Gene sequence:

>618_bases
ATGTTGCGGCGCTCGTCGTTTTTTTGTCTACTGGCACTGCTCAGTGTTACAAGCTGTGGGACTCTTCTTCCAGATAGTAA
CGTCGGAGTTGGACGTCATGACCTTGGAAGTCACCGCAGTGTTGCTTTTGCAAAAAAAGTTGAGAAAGTATATTTCGATA
TCGGGAAGTACGATCTAAAGGGTCCCGGAAAGAAGGTAATTCTGGAGCTTGTTGAGCAGCTCAGACAGGATGACAGCATG
TATTTGGTGGTAATTGGGCACGCAGACGCTACCGGCACTGAAGAATATAGTCTTGCGTTAGGTGAAAAAAGGGCTAATGC
CGTTAAGCAATTCATCATAGGATGCGATAAATCTCTGGCTCCTAGGGTCACAACACAATCTAGGGGAAAGGCGGAACCAG
AGGTTTTGGTATATTCTACTGATGCTCAGGAGGTTGAGAAAGCCAACGCGCAAAATCGTAGAGCTGTGATAGTGGTGGAG
TTTGCACACATTCCAAGGAGTGGTGTAGCTGACATGCATGCGCCTGTTGCTTCTTCCATTACCTCCGAAAATTCCAATGC
CTCCGCTGAAGGTGAGGACATGGAAGCTTCTGAATTCTCTAGCGCAATCGCTAACTAG

Upstream 100 bases:

>100_bases
TGGTGTAGTTTTAAGCAATGATCTATTCGTGGTGTGTGGCCTTTTCGGTTATGGCTTTTTCAGTTGTTTAATGTAAGTTT
ACTGCAGAGGAGGTGCTACT

Downstream 100 bases:

>100_bases
ATACACTATCTGTGTTTTCTATGGTGTGGGTTAATTTGGAAGAGAGAGTGACATATCTTTGGGATCGTGGCTAAGTTTCT
CATCATTGTGAATTCGCCGG

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MLRRSSFFCLLALLSVTSCGTLLPDSNVGVGRHDLGSHRSVAFAKKVEKVYFDIGKYDLKGPGKKVILELVEQLRQDDSM
YLVVIGHADATGTEEYSLALGEKRANAVKQFIIGCDKSLAPRVTTQSRGKAEPEVLVYSTDAQEVEKANAQNRRAVIVVE
FAHIPRSGVADMHAPVASSITSENSNASAEGEDMEASEFSSAIAN

Sequences:

>Translated_205_residues
MLRRSSFFCLLALLSVTSCGTLLPDSNVGVGRHDLGSHRSVAFAKKVEKVYFDIGKYDLKGPGKKVILELVEQLRQDDSM
YLVVIGHADATGTEEYSLALGEKRANAVKQFIIGCDKSLAPRVTTQSRGKAEPEVLVYSTDAQEVEKANAQNRRAVIVVE
FAHIPRSGVADMHAPVASSITSENSNASAEGEDMEASEFSSAIAN
>Mature_205_residues
MLRRSSFFCLLALLSVTSCGTLLPDSNVGVGRHDLGSHRSVAFAKKVEKVYFDIGKYDLKGPGKKVILELVEQLRQDDSM
YLVVIGHADATGTEEYSLALGEKRANAVKQFIIGCDKSLAPRVTTQSRGKAEPEVLVYSTDAQEVEKANAQNRRAVIVVE
FAHIPRSGVADMHAPVASSITSENSNASAEGEDMEASEFSSAIAN

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=109, Percent_Identity=41.2844036697248, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22118; Mature: 22118

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRSSFFCLLALLSVTSCGTLLPDSNVGVGRHDLGSHRSVAFAKKVEKVYFDIGKYDLK
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
GPGKKVILELVEQLRQDDSMYLVVIGHADATGTEEYSLALGEKRANAVKQFIIGCDKSLA
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PRVTTQSRGKAEPEVLVYSTDAQEVEKANAQNRRAVIVVEFAHIPRSGVADMHAPVASSI
CCCCCCCCCCCCCEEEEEECCHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHH
TSENSNASAEGEDMEASEFSSAIAN
HCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MLRRSSFFCLLALLSVTSCGTLLPDSNVGVGRHDLGSHRSVAFAKKVEKVYFDIGKYDLK
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
GPGKKVILELVEQLRQDDSMYLVVIGHADATGTEEYSLALGEKRANAVKQFIIGCDKSLA
CCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PRVTTQSRGKAEPEVLVYSTDAQEVEKANAQNRRAVIVVEFAHIPRSGVADMHAPVASSI
CCCCCCCCCCCCCEEEEEECCHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHH
TSENSNASAEGEDMEASEFSSAIAN
HCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]