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The map label for this gene is secB

Identifier: 88606982

GI number: 88606982

Start: 102441

End: 102917

Strand: Direct

Name: secB

Synonym: APH_0097

Alternate gene names: 88606982

Gene position: 102441-102917 (Clockwise)

Preceding gene: 88607084

Following gene: 88607835

Centisome position: 6.96

GC content: 43.4

Gene sequence:

>477_bases
GTGCAGCCAAAAATTAGAGTAAGAGGGCAGTACATTAAGGATCTATCTTTTGAGAATCCTAATGCTCCTAAGGTGTTTCT
CATGATGAGTAAGACACCTCCTGAGATTAATATTTCGGTTAATGTTTCTTCTGCAGCGTTACCTGTAAAGCCTCCAGAGG
GGGAGCAAGCAAGTGTTGCGCTATACGAGGTGGCTTTGCAAATCAACATAGAGTCGGTGGTAGAGAAGCTTCCTGCATTT
ATCTGTGAAATAAAATACTGTGGTGTGTTTTCCATAGAGGAAGATGAGGAGTTGGAACAGGAGCAGGTCAAGAGGGCGCT
TTTAATAAATGCACCTAGTATCTTGTTTCCATTTGTGCGCGAAGTAATCGCAAAGGTTACTTCTTCTGCGGGCTTTCCTC
CGCTAATGTTGGAGGTCATAGATTTTTCAGCCATGTATGAGAAGCAGCTCGCTGAGAATGCGGATGGTGAGAAATAA

Upstream 100 bases:

>100_bases
ATTTTTCACAAAGGCTATGTACAAGAATACATAACCATATTATAGTTTGATCAGCGTTAATCAACAATTAATTGCGGTAT
TTCCGTCAGAGGAGGTTTTA

Downstream 100 bases:

>100_bases
TTAATGTGTTTCGCTTAAGTGGGGAAGTACATTGGTGTTTTTTGTTGACTTTCATATTTAGGTGGGGGCTATGGGATTCT
TGCGGTTGTGCTTGGGGATT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MQPKIRVRGQYIKDLSFENPNAPKVFLMMSKTPPEINISVNVSSAALPVKPPEGEQASVALYEVALQINIESVVEKLPAF
ICEIKYCGVFSIEEDEELEQEQVKRALLINAPSILFPFVREVIAKVTSSAGFPPLMLEVIDFSAMYEKQLAENADGEK

Sequences:

>Translated_158_residues
MQPKIRVRGQYIKDLSFENPNAPKVFLMMSKTPPEINISVNVSSAALPVKPPEGEQASVALYEVALQINIESVVEKLPAF
ICEIKYCGVFSIEEDEELEQEQVKRALLINAPSILFPFVREVIAKVTSSAGFPPLMLEVIDFSAMYEKQLAENADGEK
>Mature_158_residues
MQPKIRVRGQYIKDLSFENPNAPKVFLMMSKTPPEINISVNVSSAALPVKPPEGEQASVALYEVALQINIESVVEKLPAF
ICEIKYCGVFSIEEDEELEQEQVKRALLINAPSILFPFVREVIAKVTSSAGFPPLMLEVIDFSAMYEKQLAENADGEK

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=144, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_ANAPZ (Q2GLM6)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_504725.1
- ProteinModelPortal:   Q2GLM6
- SMR:   Q2GLM6
- STRING:   Q2GLM6
- GeneID:   3931332
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0097
- NMPDR:   fig|212042.5.peg.91
- TIGR:   APH_0097
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q2GLM6
- ProtClustDB:   PRK05751
- BioCyc:   APHA212042:APH_0097-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17574; Mature: 17574

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPKIRVRGQYIKDLSFENPNAPKVFLMMSKTPPEINISVNVSSAALPVKPPEGEQASVA
CCCCEEECCHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHEE
LYEVALQINIESVVEKLPAFICEIKYCGVFSIEEDEELEQEQVKRALLINAPSILFPFVR
EEHHEEEECHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHH
EVIAKVTSSAGFPPLMLEVIDFSAMYEKQLAENADGEK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQPKIRVRGQYIKDLSFENPNAPKVFLMMSKTPPEINISVNVSSAALPVKPPEGEQASVA
CCCCEEECCHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHEE
LYEVALQINIESVVEKLPAFICEIKYCGVFSIEEDEELEQEQVKRALLINAPSILFPFVR
EEHHEEEECHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHH
EVIAKVTSSAGFPPLMLEVIDFSAMYEKQLAENADGEK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA