Click here to switch to the map view.

The map label for this gene is 88606954

Identifier: 88606954

GI number: 88606954

Start: 532954

End: 533613

Strand: Reverse

Name: 88606954

Synonym: APH_0506

Alternate gene names: NA

Gene position: 533613-532954 (Counterclockwise)

Preceding gene: 88606833

Following gene: 88607141

Centisome position: 36.27

GC content: 39.55

Gene sequence:

>660_bases
ATGTCTGTTGCATTGCCGTACTTAAGAGCTTTGACTCCTGTAGAATATAACATAGGCTATACGAGAAATGTTGCGTTTTC
TGACCCCTTTAATGTGGGATATAAATCGCAAATGGCTAACTGGAGCTTCACTGCTTCGATGTTATGGCCAATATTTAACG
GTAAGTACTATCACGAATTTGAGCTTCATAGCGCTAAAGCTGTACCATCATTGAACGTTGATACTCAGCATGGTTTTGGC
ATAATCAAGGCGATGAGGAATGTATACGGAATACACGACTTATCTGCATCATCCGCTGAGAATATGCTCACCATAAGGTC
TACGGCTGCGTCTTACGGTTTTTATAGGTATCACCCAATAAACGAGTCATCGAGCTTATATGTTGGCACTGGAATTGGCA
TTGCTAAAATACTACAATACCAGGGATTCAGAAGGAATTCTGAGGACTTATTCGGTATAGTAAAAAACTTTAGATTGGGT
ATAGTACACAAATTTATTTCTGGATTGTCTGCTTATGTAGGGTATACCTACAGGATTACCTCTTGGAAGTATAAAAGCGA
CACAATATACGATCAGGATGGTAATAGCATCACGTATGATCTGCAGAACTTTGAATTCTCTACCCATGGCTTAGACCTAG
GCGTAAGATTTTCCATGTAA

Upstream 100 bases:

>100_bases
TTTAATACAGGATTCCGCAGGGCGCTTCTCTTAGGTTTTCCGTTGGAAAAGTGCAAATACTGTTCGTAGAGAGGGGGAGC
TTGTGCTGGATTTTTCACAT

Downstream 100 bases:

>100_bases
AAATGTGTATACGCAGCTCAAGTACCCGCAATTCATCTTTAGCGTGAATAACATATGCTCATGCCTATGCTTACAGCGCC
TTTTTTGCTACGAAGCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSVALPYLRALTPVEYNIGYTRNVAFSDPFNVGYKSQMANWSFTASMLWPIFNGKYYHEFELHSAKAVPSLNVDTQHGFG
IIKAMRNVYGIHDLSASSAENMLTIRSTAASYGFYRYHPINESSSLYVGTGIGIAKILQYQGFRRNSEDLFGIVKNFRLG
IVHKFISGLSAYVGYTYRITSWKYKSDTIYDQDGNSITYDLQNFEFSTHGLDLGVRFSM

Sequences:

>Translated_219_residues
MSVALPYLRALTPVEYNIGYTRNVAFSDPFNVGYKSQMANWSFTASMLWPIFNGKYYHEFELHSAKAVPSLNVDTQHGFG
IIKAMRNVYGIHDLSASSAENMLTIRSTAASYGFYRYHPINESSSLYVGTGIGIAKILQYQGFRRNSEDLFGIVKNFRLG
IVHKFISGLSAYVGYTYRITSWKYKSDTIYDQDGNSITYDLQNFEFSTHGLDLGVRFSM
>Mature_218_residues
SVALPYLRALTPVEYNIGYTRNVAFSDPFNVGYKSQMANWSFTASMLWPIFNGKYYHEFELHSAKAVPSLNVDTQHGFGI
IKAMRNVYGIHDLSASSAENMLTIRSTAASYGFYRYHPINESSSLYVGTGIGIAKILQYQGFRRNSEDLFGIVKNFRLGI
VHKFISGLSAYVGYTYRITSWKYKSDTIYDQDGNSITYDLQNFEFSTHGLDLGVRFSM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24860; Mature: 24729

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVALPYLRALTPVEYNIGYTRNVAFSDPFNVGYKSQMANWSFTASMLWPIFNGKYYHEF
CCCCCCHHHHCCCEEECCCEEEEECCCCCCCCCCHHHCCCCEEEHEEEEHHHCCCEEEEE
ELHSAKAVPSLNVDTQHGFGIIKAMRNVYGIHDLSASSAENMLTIRSTAASYGFYRYHPI
EECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHCCEEEEECC
NESSSLYVGTGIGIAKILQYQGFRRNSEDLFGIVKNFRLGIVHKFISGLSAYVGYTYRIT
CCCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
SWKYKSDTIYDQDGNSITYDLQNFEFSTHGLDLGVRFSM
EEEECCCEEEECCCCEEEEEEECCEEECCCEEEEEEECC
>Mature Secondary Structure 
SVALPYLRALTPVEYNIGYTRNVAFSDPFNVGYKSQMANWSFTASMLWPIFNGKYYHEF
CCCCCHHHHCCCEEECCCEEEEECCCCCCCCCCHHHCCCCEEEHEEEEHHHCCCEEEEE
ELHSAKAVPSLNVDTQHGFGIIKAMRNVYGIHDLSASSAENMLTIRSTAASYGFYRYHPI
EECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHCCEEEEECC
NESSSLYVGTGIGIAKILQYQGFRRNSEDLFGIVKNFRLGIVHKFISGLSAYVGYTYRIT
CCCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
SWKYKSDTIYDQDGNSITYDLQNFEFSTHGLDLGVRFSM
EEEECCCEEEECCCCEEEEEEECCEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA