Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87199922
Identifier: 87199922
GI number: 87199922
Start: 2018861
End: 2019040
Strand: Reverse
Name: 87199922
Synonym: Saro_1905
Alternate gene names: NA
Gene position: 2019040-2018861 (Counterclockwise)
Preceding gene: 87199923
Following gene: 87199917
Centisome position: 56.69
GC content: 60.0
Gene sequence:
>180_bases ATGAAGCTTTTCCGTAACCTGCTCGCGAACAACGAAGGCGCCACCGCAATCGAATACGGCCTGATCGCCGCTCTCGTCGC CGTCGCCGCCATCGGCGCCATGAGCTCGCTGGGTACCTCGCTGAGCACCACCTTCAACAACGTTTCGACCGAAATGGATA ACGCCAGCCCGACTGCCTAA
Upstream 100 bases:
>100_bases AACGGCTTCTTAGGCTTTGATACGTAGCAATGCGAATGCTCGCTCCGGGGACAAAATTGGGGTGAGACGGGATGAGAAGA AACACTCTAGGAGACCGACC
Downstream 100 bases:
>100_bases TTACGGCAGCTGACCGGCAATCCAGTCGATCAAGCAAGAGGCGGTCGCAAAGCGGCCGCCTCTTTCATTTGTCTGCTACC AACTGGGTTTGGATCAGCTC
Product: Flp/Fap pilin component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 59; Mature: 59
Protein sequence:
>59_residues MKLFRNLLANNEGATAIEYGLIAALVAVAAIGAMSSLGTSLSTTFNNVSTEMDNASPTA
Sequences:
>Translated_59_residues MKLFRNLLANNEGATAIEYGLIAALVAVAAIGAMSSLGTSLSTTFNNVSTEMDNASPTA >Mature_59_residues MKLFRNLLANNEGATAIEYGLIAALVAVAAIGAMSSLGTSLSTTFNNVSTEMDNASPTA
Specific function: Unknown
COG id: COG3847
COG function: function code U; Flp pilus assembly protein, pilin Flp
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 6006; Mature: 6006
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLFRNLLANNEGATAIEYGLIAALVAVAAIGAMSSLGTSLSTTFNNVSTEMDNASPTA CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MKLFRNLLANNEGATAIEYGLIAALVAVAAIGAMSSLGTSLSTTFNNVSTEMDNASPTA CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA