Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is apbA [H]
Identifier: 87199694
GI number: 87199694
Start: 1761461
End: 1762420
Strand: Reverse
Name: apbA [H]
Synonym: Saro_1677
Alternate gene names: 87199694
Gene position: 1762420-1761461 (Counterclockwise)
Preceding gene: 87199695
Following gene: 87199691
Centisome position: 49.48
GC content: 68.54
Gene sequence:
>960_bases ATGTACGAGCGAGGGACTATCCAGATGGAGCGCGTGGTTATCGTCGGTGCCGGCGCGATGGGCTGCCTCTTTGCGGCAAG GCTGGCCCTGGCCGGAAAGCAGGTCACGCTGGTTGACGTCGACACCGCGCGGCTGGAGCAAATCGCGGCCCGCGGAATAG TCCTGCACGACGACCACGGCGACCGCACGGCCCGCGTCACCGCCTGCACTGCGGCAGATGCCGAGCCGGCAGACCTCGTG CTCGTTTTCACCAAGGCAATGCATACCGCAGCAGCCATCCGTTCGGTCGCGCATCTGAACGACGGACATTGCTGCGCCCT TACCCTGCAGAACGGCCTGGGTAACGCCGAAGCCTTGGCTGAGGTCTTCCCGGCAGATCGCGTGCTGATCGGCGTGACCG ACTGGCCCGCAGACCTCCTGCCGCCGAACGGCGTCGCCGCGCACGGCACGGGCCACGTGTGGCTGGGCCCCTGCGACAAG GCCGGCGCAGACCATGCGCAAGCCGCAACCACGCTGCTCAACGCGGGCCGGATGGATGCCCGGCACGATCCCGATGTCCT TGCGGCAGTGTGGGAAAAAGCCGCGTTCAACGCCGCGCTGAATGCGCTCTCCACCGTGCTTGGCCTGCCGGTGGGCGGAC TGGACACGCCAGAGGGCCGTCGCATTGCGGTTGCCGTGGTCGACGAGACCGTCGCCGTCGCGGCCAGTCGGGGCATTGCC ATGGACCGCGCGAGACTGGCGGCGAAGATCGACTTCGCCCTCGCCAACCACAAGGCGCACAAGCCATCGATGCTACAGGA CCGCCTCGCCGGGCGGCCGACCGAAATCGACGCGATCAACGGACAGATCGTGAATGCGGCGACGGCAGCGGGGCTCACCG CGCCAGTGACCGCGACGCTTGCCGATCTGGTGCGAATGGGCGAGCCGGGGCGGACCCAGGCCCGCCCCGCGCTCTCCTAG
Upstream 100 bases:
>100_bases CGGCCTTCTACCGGATGCGGCGAGCCAGTTCGTACGTCATTTTCCGCTTGTCGGCAGCGGGGCTTGACCGACCAATCCAC CCGCCGGGATACTCGCGCGC
Downstream 100 bases:
>100_bases CCCGCGATCAGAACTTCGCGCCCGCGCGCAGGCCGAACATGCGCGGCGTGGTGGGCACGATATAGGGACGCTGGCCGCAC GATCCGCACTGCTGGAAGCG
Product: 2-dehydropantoate 2-reductase
Products: NA
Alternate protein names: Ketopantoate reductase; KPA reductase; KPR [H]
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MYERGTIQMERVVIVGAGAMGCLFAARLALAGKQVTLVDVDTARLEQIAARGIVLHDDHGDRTARVTACTAADAEPADLV LVFTKAMHTAAAIRSVAHLNDGHCCALTLQNGLGNAEALAEVFPADRVLIGVTDWPADLLPPNGVAAHGTGHVWLGPCDK AGADHAQAATTLLNAGRMDARHDPDVLAAVWEKAAFNAALNALSTVLGLPVGGLDTPEGRRIAVAVVDETVAVAASRGIA MDRARLAAKIDFALANHKAHKPSMLQDRLAGRPTEIDAINGQIVNAATAAGLTAPVTATLADLVRMGEPGRTQARPALS
Sequences:
>Translated_319_residues MYERGTIQMERVVIVGAGAMGCLFAARLALAGKQVTLVDVDTARLEQIAARGIVLHDDHGDRTARVTACTAADAEPADLV LVFTKAMHTAAAIRSVAHLNDGHCCALTLQNGLGNAEALAEVFPADRVLIGVTDWPADLLPPNGVAAHGTGHVWLGPCDK AGADHAQAATTLLNAGRMDARHDPDVLAAVWEKAAFNAALNALSTVLGLPVGGLDTPEGRRIAVAVVDETVAVAASRGIA MDRARLAAKIDFALANHKAHKPSMLQDRLAGRPTEIDAINGQIVNAATAAGLTAPVTATLADLVRMGEPGRTQARPALS >Mature_319_residues MYERGTIQMERVVIVGAGAMGCLFAARLALAGKQVTLVDVDTARLEQIAARGIVLHDDHGDRTARVTACTAADAEPADLV LVFTKAMHTAAAIRSVAHLNDGHCCALTLQNGLGNAEALAEVFPADRVLIGVTDWPADLLPPNGVAAHGTGHVWLGPCDK AGADHAQAATTLLNAGRMDARHDPDVLAAVWEKAAFNAALNALSTVLGLPVGGLDTPEGRRIAVAVVDETVAVAASRGIA MDRARLAAKIDFALANHKAHKPSMLQDRLAGRPTEIDAINGQIVNAATAAGLTAPVTATLADLVRMGEPGRTQARPALS
Specific function: Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid [H]
COG id: COG1893
COG function: function code H; Ketopantoate reductase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ketopantoate reductase family [H]
Homologues:
Organism=Escherichia coli, GI1786627, Length=299, Percent_Identity=26.0869565217391, Blast_Score=71, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6320057, Length=334, Percent_Identity=24.251497005988, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR003710 - InterPro: IPR013752 - InterPro: IPR013332 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF02558 ApbA; PF08546 ApbA_C [H]
EC number: =1.1.1.169 [H]
Molecular weight: Translated: 33008; Mature: 33008
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYERGTIQMERVVIVGAGAMGCLFAARLALAGKQVTLVDVDTARLEQIAARGIVLHDDHG CCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEECCCC DRTARVTACTAADAEPADLVLVFTKAMHTAAAIRSVAHLNDGHCCALTLQNGLGNAEALA CCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH EVFPADRVLIGVTDWPADLLPPNGVAAHGTGHVWLGPCDKAGADHAQAATTLLNAGRMDA HHCCCCEEEEEECCCCHHCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC RHDPDVLAAVWEKAAFNAALNALSTVLGLPVGGLDTPEGRRIAVAVVDETVAVAASRGIA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCH MDRARLAAKIDFALANHKAHKPSMLQDRLAGRPTEIDAINGQIVNAATAAGLTAPVTATL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCEEEEHHHHCCCCCHHHHHH ADLVRMGEPGRTQARPALS HHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MYERGTIQMERVVIVGAGAMGCLFAARLALAGKQVTLVDVDTARLEQIAARGIVLHDDHG CCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCEEEECCCC DRTARVTACTAADAEPADLVLVFTKAMHTAAAIRSVAHLNDGHCCALTLQNGLGNAEALA CCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH EVFPADRVLIGVTDWPADLLPPNGVAAHGTGHVWLGPCDKAGADHAQAATTLLNAGRMDA HHCCCCEEEEEECCCCHHCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC RHDPDVLAAVWEKAAFNAALNALSTVLGLPVGGLDTPEGRRIAVAVVDETVAVAASRGIA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCH MDRARLAAKIDFALANHKAHKPSMLQDRLAGRPTEIDAINGQIVNAATAAGLTAPVTATL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCEEEEHHHHCCCCCHHHHHH ADLVRMGEPGRTQARPALS HHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11296296 [H]