Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is pgm [H]
Identifier: 87199672
GI number: 87199672
Start: 1731193
End: 1732821
Strand: Reverse
Name: pgm [H]
Synonym: Saro_1655
Alternate gene names: 87199672
Gene position: 1732821-1731193 (Counterclockwise)
Preceding gene: 87199673
Following gene: 87199671
Centisome position: 48.65
GC content: 63.97
Gene sequence:
>1629_bases ATGACTCGTACCGTTCCGTCGACGCCCTGTTCCGGCCAGAAGCCGGGCACGTCCGGCCTGCGCAAGAAAGTGAAGGTCTT CCAACAGCCGAACTACGCGGAAAACTTCATCCAGTCGGTATTCGACGTGGTCGAGCGCGCGCCTGGCAGCGCGCTGGTCG TTGGCGGCGACGGCCGCTACCACAACCGCACCGTCATCCAGCAGGCCATCCGCATCGCCGCCGCCAACGGCTATGGCAAG GTTCTGGTCGGTCGGGGCGGCATCCTTTCCACCCCCGCCGCATCCAACGTCATCCGCAAGTACGGCGCTTCTGGCGGCCT GATCCTGTCGGCCAGCCACAACCCCGGCGGTCCGGACGAGGATTTCGGCATCAAGTACAACATTGCCAACGGCGGCCCTG CTCCCGAGGCTGTAACCGAGGCGATCTATGCCCGCACCCAGACAATCGACCGCTGGCTGACCGTCGACGCGCCGGACGTC GACCTCGACAGGCTCGGCTCAACCCAGGTCGAAGCGATGACAGTGGACGTCATAGACTCCGTTTCCGATTACGCCGAACT CATGGAATCCCTTTTCGATTTCAATGCAATACGCGCCAATGTTGAGGGCGGGTTCACCATGGCCTTCGACGCGATGAGCG CGGTCACCGGTCCCTACGCCATCGAGATCCTCGAAAACCGCCTCGGCTTTCCCAAGGGCACGGTGCGCAACGGCATTCCG CTCGAGGACTTTGGGGGTCATCACCCCGATCCCAACATGGTCCACGCCCACGAGCTGTTCGATACGATGTTCGGCCCGGA CGCTCCGGATTTCGGCGCCGCCTCCGATGGCGACGGCGATCGCAACCTGATCGTCGGCCGGCACCGCTTCGTCACCCCGT CCGACAGCCTGGCCATGCTCGCCGCCAATGCGCACCTCGCACCGGGCTATGCCGGCGGTCTCAACGGCATTGCCCGCTCG ATGCCGACAAGCGCTGCGGCTGATCGTGTGGCGGAGGCACTGGGCCTGCCCTGCTTCGAGACGCCAACCGGCTGGAAATT CTTCGGAAACCTTCTCGATGCCGGCATGGCCACGATCTGCGGCGAGGAAAGCGCGGGCACCGGAAGCGACCATGTACGCG AAAAGGACGGCCTCTGGGCGGTGCTGCTATGGCTCAACATCCTCGCGGTTCGCAGGATCGGCGTCGATCAGCTCGCACGG GAGCATTGGGCGCGGTTCGGCCGCAACTACTACGCCCGCCACGACTACGAGGCGCTGCCGACCGACAGGGCCGATGCACT CATGGCAGAACTCAACCAATCGCTCTCAAGTCTTTCAGGCAAGCCATTCGGAAATTTGACTATTTCGACAGCCGACAACT TCTCCTATCTCGACCCGGTCGATGGATCGACCAGCAGCAATCAGGGTGTCCGCATCCTGTTCGAAGGTGGCTCGCGCGTG GTCTTCCGTCTTTCCGGCACCGGCACCGAAGGCGCCACCCTGCGCGTCTATCTCGAACGCTACGAACCGGTGGGCGGCGA TCTCGACCGTGAAACGCCTGAAATGCTTGCCGATCTCATCCGGGCGGCAGACGCCATCGCCGGCATCGCGCGTCACACCG GACGCACCGCGCCCGACGTGGTGACGTGA
Upstream 100 bases:
>100_bases GGCGCGCGATGCAGCGAGCCGGCATGAAGACCGACTTTTCGTGGAGCCGCTCGGGCAAGGCCTATGCGGACCTCTACGCC GCCCTCATCGCGGAGGACCA
Downstream 100 bases:
>100_bases CGCCGGGCGTCTTTCTGGCGGACGGCGCCACCCGCTTCTCCGTCCGCTCCCCTCGCGCCGAGGCACTGACGCTCTGCCTG TTCGAGGACGAAGCCGAGCA
Product: phosphoglucomutase
Products: NA
Alternate protein names: PGM; Glucose phosphomutase [H]
Number of amino acids: Translated: 542; Mature: 541
Protein sequence:
>542_residues MTRTVPSTPCSGQKPGTSGLRKKVKVFQQPNYAENFIQSVFDVVERAPGSALVVGGDGRYHNRTVIQQAIRIAAANGYGK VLVGRGGILSTPAASNVIRKYGASGGLILSASHNPGGPDEDFGIKYNIANGGPAPEAVTEAIYARTQTIDRWLTVDAPDV DLDRLGSTQVEAMTVDVIDSVSDYAELMESLFDFNAIRANVEGGFTMAFDAMSAVTGPYAIEILENRLGFPKGTVRNGIP LEDFGGHHPDPNMVHAHELFDTMFGPDAPDFGAASDGDGDRNLIVGRHRFVTPSDSLAMLAANAHLAPGYAGGLNGIARS MPTSAAADRVAEALGLPCFETPTGWKFFGNLLDAGMATICGEESAGTGSDHVREKDGLWAVLLWLNILAVRRIGVDQLAR EHWARFGRNYYARHDYEALPTDRADALMAELNQSLSSLSGKPFGNLTISTADNFSYLDPVDGSTSSNQGVRILFEGGSRV VFRLSGTGTEGATLRVYLERYEPVGGDLDRETPEMLADLIRAADAIAGIARHTGRTAPDVVT
Sequences:
>Translated_542_residues MTRTVPSTPCSGQKPGTSGLRKKVKVFQQPNYAENFIQSVFDVVERAPGSALVVGGDGRYHNRTVIQQAIRIAAANGYGK VLVGRGGILSTPAASNVIRKYGASGGLILSASHNPGGPDEDFGIKYNIANGGPAPEAVTEAIYARTQTIDRWLTVDAPDV DLDRLGSTQVEAMTVDVIDSVSDYAELMESLFDFNAIRANVEGGFTMAFDAMSAVTGPYAIEILENRLGFPKGTVRNGIP LEDFGGHHPDPNMVHAHELFDTMFGPDAPDFGAASDGDGDRNLIVGRHRFVTPSDSLAMLAANAHLAPGYAGGLNGIARS MPTSAAADRVAEALGLPCFETPTGWKFFGNLLDAGMATICGEESAGTGSDHVREKDGLWAVLLWLNILAVRRIGVDQLAR EHWARFGRNYYARHDYEALPTDRADALMAELNQSLSSLSGKPFGNLTISTADNFSYLDPVDGSTSSNQGVRILFEGGSRV VFRLSGTGTEGATLRVYLERYEPVGGDLDRETPEMLADLIRAADAIAGIARHTGRTAPDVVT >Mature_541_residues TRTVPSTPCSGQKPGTSGLRKKVKVFQQPNYAENFIQSVFDVVERAPGSALVVGGDGRYHNRTVIQQAIRIAAANGYGKV LVGRGGILSTPAASNVIRKYGASGGLILSASHNPGGPDEDFGIKYNIANGGPAPEAVTEAIYARTQTIDRWLTVDAPDVD LDRLGSTQVEAMTVDVIDSVSDYAELMESLFDFNAIRANVEGGFTMAFDAMSAVTGPYAIEILENRLGFPKGTVRNGIPL EDFGGHHPDPNMVHAHELFDTMFGPDAPDFGAASDGDGDRNLIVGRHRFVTPSDSLAMLAANAHLAPGYAGGLNGIARSM PTSAAADRVAEALGLPCFETPTGWKFFGNLLDAGMATICGEESAGTGSDHVREKDGLWAVLLWLNILAVRRIGVDQLARE HWARFGRNYYARHDYEALPTDRADALMAELNQSLSSLSGKPFGNLTISTADNFSYLDPVDGSTSSNQGVRILFEGGSRVV FRLSGTGTEGATLRVYLERYEPVGGDLDRETPEMLADLIRAADAIAGIARHTGRTAPDVVT
Specific function: This enzyme participates in both the breakdown and synthesis of glucose. Required for the synthesis of capsular polysaccharide and normal lipopolysaccharide [H]
COG id: COG0033
COG function: function code G; Phosphoglucomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI21361621, Length=558, Percent_Identity=51.7921146953405, Blast_Score=566, Evalue=1e-161, Organism=Homo sapiens, GI290463102, Length=559, Percent_Identity=51.1627906976744, Blast_Score=563, Evalue=1e-160, Organism=Homo sapiens, GI133922562, Length=560, Percent_Identity=46.0714285714286, Blast_Score=494, Evalue=1e-140, Organism=Homo sapiens, GI290463104, Length=366, Percent_Identity=50.5464480874317, Blast_Score=371, Evalue=1e-103, Organism=Homo sapiens, GI239741729, Length=173, Percent_Identity=41.6184971098266, Blast_Score=115, Evalue=8e-26, Organism=Homo sapiens, GI239743670, Length=132, Percent_Identity=45.4545454545455, Blast_Score=104, Evalue=2e-22, Organism=Escherichia coli, GI1786904, Length=498, Percent_Identity=27.1084337349398, Blast_Score=93, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17535441, Length=561, Percent_Identity=47.9500891265597, Blast_Score=506, Evalue=1e-143, Organism=Saccharomyces cerevisiae, GI6323752, Length=566, Percent_Identity=43.9929328621908, Blast_Score=472, Evalue=1e-134, Organism=Saccharomyces cerevisiae, GI6322722, Length=528, Percent_Identity=45.0757575757576, Blast_Score=456, Evalue=1e-129, Organism=Drosophila melanogaster, GI17864244, Length=556, Percent_Identity=48.5611510791367, Blast_Score=525, Evalue=1e-149,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 57807; Mature: 57676
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTVPSTPCSGQKPGTSGLRKKVKVFQQPNYAENFIQSVFDVVERAPGSALVVGGDGRY CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC HNRTVIQQAIRIAAANGYGKVLVGRGGILSTPAASNVIRKYGASGGLILSASHNPGGPDE CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC DFGIKYNIANGGPAPEAVTEAIYARTQTIDRWLTVDAPDVDLDRLGSTQVEAMTVDVIDS CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCCCEEEHHHHHH VSDYAELMESLFDFNAIRANVEGGFTMAFDAMSAVTGPYAIEILENRLGFPKGTVRNGIP HHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC LEDFGGHHPDPNMVHAHELFDTMFGPDAPDFGAASDGDGDRNLIVGRHRFVTPSDSLAML CHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCEEEE AANAHLAPGYAGGLNGIARSMPTSAAADRVAEALGLPCFETPTGWKFFGNLLDAGMATIC EECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC GEESAGTGSDHVREKDGLWAVLLWLNILAVRRIGVDQLAREHWARFGRNYYARHDYEALP CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC TDRADALMAELNQSLSSLSGKPFGNLTISTADNFSYLDPVDGSTSSNQGVRILFEGGSRV CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEE VFRLSGTGTEGATLRVYLERYEPVGGDLDRETPEMLADLIRAADAIAGIARHTGRTAPDV EEEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC VT CC >Mature Secondary Structure TRTVPSTPCSGQKPGTSGLRKKVKVFQQPNYAENFIQSVFDVVERAPGSALVVGGDGRY CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC HNRTVIQQAIRIAAANGYGKVLVGRGGILSTPAASNVIRKYGASGGLILSASHNPGGPDE CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCC DFGIKYNIANGGPAPEAVTEAIYARTQTIDRWLTVDAPDVDLDRLGSTQVEAMTVDVIDS CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCCCCCEEEHHHHHH VSDYAELMESLFDFNAIRANVEGGFTMAFDAMSAVTGPYAIEILENRLGFPKGTVRNGIP HHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC LEDFGGHHPDPNMVHAHELFDTMFGPDAPDFGAASDGDGDRNLIVGRHRFVTPSDSLAML CHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCEEEE AANAHLAPGYAGGLNGIARSMPTSAAADRVAEALGLPCFETPTGWKFFGNLLDAGMATIC EECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC GEESAGTGSDHVREKDGLWAVLLWLNILAVRRIGVDQLAREHWARFGRNYYARHDYEALP CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC TDRADALMAELNQSLSSLSGKPFGNLTISTADNFSYLDPVDGSTSSNQGVRILFEGGSRV CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCEE VFRLSGTGTEGATLRVYLERYEPVGGDLDRETPEMLADLIRAADAIAGIARHTGRTAPDV EEEEECCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC VT CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7959036; 2307661 [H]