Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is pksS [H]
Identifier: 87199665
GI number: 87199665
Start: 1723704
End: 1724894
Strand: Reverse
Name: pksS [H]
Synonym: Saro_1648
Alternate gene names: 87199665
Gene position: 1724894-1723704 (Counterclockwise)
Preceding gene: 87199671
Following gene: 87199664
Centisome position: 48.43
GC content: 64.32
Gene sequence:
>1191_bases ATGGCTACCGTGATCGAGCGGCCGCAATTCCGCTTCGACCCATATTCCCCGGCAATCGACGCCGACCCGTTCCCCGCCTA CAAGGTGCTGCGCGACGAATACCCCTGCTTCTGGTCCGAGGAGGCCGGAAAGTGGGTGCTCTCGCGCTATGACGACGTGC TTGCAGCGCTGCAGGACTGGCGGACCTATTCTTCCGCCAAGGGCAACCTCGTGGACGAGTTTCCCGGTCGCGCCGGCTCG ACGCTGGGATCGAGTGATCCGCCGCGCCATGACCGCCTGCGCGCCCTCATCCAGTCGGCCGTGACCAAGCGTGCGCTTGA ACACATTATCGCACCAGCCCGGGCATCGGCCCAGGCGCATCTGGCCGCGCTGGCGGACAAGCCGGTGTTCGACCTGGTGG GCGACTACACGTCGAAGCTGACGGTCGACCTCCTCTTCTACCTTTTCGCCCTGCCGGACGAAGGCGCGCAGCAGGTGCGC GAGAACGCGGTGCTGATGGTCCAGACCGATCCGGTCACGCGCCAGAAGAGCCCCGAACATCTCGCGGCGTTCCATTGGAT GGCGGACTACGCCGAAAAGCTGGTCGCCTCGCGCAAGGCGAACCCCGGCGACGACCTCCTGTCCAGCTTCATCACCGCCG AGATCGACGGGGAGAAGTTGCTCGACAAGGAAGTCCAGCTTACCGTCACCACGCTGATCATGGCGGGCATCGAAAGCCTT TCGGGCTTCATGGCAATGTTCGGCCTGAACCTTGCCGACTATCCCGAAGCGCGCAGCGCGCTGGTTGCCGACCCTTCGCT GATCCCCGATGCGATCGAGGAATCGTTGCGGTTCAACACTTCCGCCCAGCGATTCAAACGGACGTTGACGCGGGACGTGG AGCTTCACGGACAGGTGATGAAGGCTGGCGACGCGGTGATCCTCGCCTATGGATCAGCCAATCGCGACGAGCGGATGTTC GAGAATCCGGACGTCTACGACATCACCCGCAAGCCGCGGCGCCACCTCGGCTTCGGCGGCGGTGTCCACGCCTGCCTTGG CTCGATGATCGGGCGCCTGGCGACGCAGATCGCCTACGAGGAACTCCTGAAGGCGGTGCCCGATTTCCGGCGTGCCGACG CCCCGCTCGACTGGGTGCCTTCATCCAACTTCCGCAGTCCGAAGTCGCTCATGCTCGAAAAGAAGGCCTGA
Upstream 100 bases:
>100_bases ACCGATTGCATGAAAAGTACAAGGAATTGCGGCGAACCTGCGTCGCCTTCCTCACCGTGCAGAGGCAGGATGCCGGGCAC TTGAGAGAGGACACAGGCTC
Downstream 100 bases:
>100_bases GTTTCCGCGCGGCGGCTCGACAGGCGGCGGGTCATGCACGACTCGTCGCAAGGATGGGCCGCCGCACTTGAAGGTGTGAC GTGCAGCATACAAATTCGGG
Product: cytochrome P450
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MATVIERPQFRFDPYSPAIDADPFPAYKVLRDEYPCFWSEEAGKWVLSRYDDVLAALQDWRTYSSAKGNLVDEFPGRAGS TLGSSDPPRHDRLRALIQSAVTKRALEHIIAPARASAQAHLAALADKPVFDLVGDYTSKLTVDLLFYLFALPDEGAQQVR ENAVLMVQTDPVTRQKSPEHLAAFHWMADYAEKLVASRKANPGDDLLSSFITAEIDGEKLLDKEVQLTVTTLIMAGIESL SGFMAMFGLNLADYPEARSALVADPSLIPDAIEESLRFNTSAQRFKRTLTRDVELHGQVMKAGDAVILAYGSANRDERMF ENPDVYDITRKPRRHLGFGGGVHACLGSMIGRLATQIAYEELLKAVPDFRRADAPLDWVPSSNFRSPKSLMLEKKA
Sequences:
>Translated_396_residues MATVIERPQFRFDPYSPAIDADPFPAYKVLRDEYPCFWSEEAGKWVLSRYDDVLAALQDWRTYSSAKGNLVDEFPGRAGS TLGSSDPPRHDRLRALIQSAVTKRALEHIIAPARASAQAHLAALADKPVFDLVGDYTSKLTVDLLFYLFALPDEGAQQVR ENAVLMVQTDPVTRQKSPEHLAAFHWMADYAEKLVASRKANPGDDLLSSFITAEIDGEKLLDKEVQLTVTTLIMAGIESL SGFMAMFGLNLADYPEARSALVADPSLIPDAIEESLRFNTSAQRFKRTLTRDVELHGQVMKAGDAVILAYGSANRDERMF ENPDVYDITRKPRRHLGFGGGVHACLGSMIGRLATQIAYEELLKAVPDFRRADAPLDWVPSSNFRSPKSLMLEKKA >Mature_395_residues ATVIERPQFRFDPYSPAIDADPFPAYKVLRDEYPCFWSEEAGKWVLSRYDDVLAALQDWRTYSSAKGNLVDEFPGRAGST LGSSDPPRHDRLRALIQSAVTKRALEHIIAPARASAQAHLAALADKPVFDLVGDYTSKLTVDLLFYLFALPDEGAQQVRE NAVLMVQTDPVTRQKSPEHLAAFHWMADYAEKLVASRKANPGDDLLSSFITAEIDGEKLLDKEVQLTVTTLIMAGIESLS GFMAMFGLNLADYPEARSALVADPSLIPDAIEESLRFNTSAQRFKRTLTRDVELHGQVMKAGDAVILAYGSANRDERMFE NPDVYDITRKPRRHLGFGGGVHACLGSMIGRLATQIAYEELLKAVPDFRRADAPLDWVPSSNFRSPKSLMLEKKA
Specific function: Involved in the metabolism of the antibiotic polyketide bacillaene which is involved in secondary metabolism. The substrate is dihydrobacillaene [H]
COG id: COG2124
COG function: function code Q; Cytochrome P450
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome P450 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001128 - InterPro: IPR002397 - InterPro: IPR017972 [H]
Pfam domain/function: PF00067 p450 [H]
EC number: NA
Molecular weight: Translated: 43979; Mature: 43848
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00086 CYTOCHROME_P450
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVIERPQFRFDPYSPAIDADPFPAYKVLRDEYPCFWSEEAGKWVLSRYDDVLAALQDW CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH RTYSSAKGNLVDEFPGRAGSTLGSSDPPRHDRLRALIQSAVTKRALEHIIAPARASAQAH HHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LAALADKPVFDLVGDYTSKLTVDLLFYLFALPDEGAQQVRENAVLMVQTDPVTRQKSPEH HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCCCCCCCHHH LAAFHWMADYAEKLVASRKANPGDDLLSSFITAEIDGEKLLDKEVQLTVTTLIMAGIESL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH SGFMAMFGLNLADYPEARSALVADPSLIPDAIEESLRFNTSAQRFKRTLTRDVELHGQVM HHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH KAGDAVILAYGSANRDERMFENPDVYDITRKPRRHLGFGGGVHACLGSMIGRLATQIAYE HCCCEEEEEECCCCCCCHHCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH ELLKAVPDFRRADAPLDWVPSSNFRSPKSLMLEKKA HHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHCCCCC >Mature Secondary Structure ATVIERPQFRFDPYSPAIDADPFPAYKVLRDEYPCFWSEEAGKWVLSRYDDVLAALQDW CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH RTYSSAKGNLVDEFPGRAGSTLGSSDPPRHDRLRALIQSAVTKRALEHIIAPARASAQAH HHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH LAALADKPVFDLVGDYTSKLTVDLLFYLFALPDEGAQQVRENAVLMVQTDPVTRQKSPEH HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCCCCCCCHHH LAAFHWMADYAEKLVASRKANPGDDLLSSFITAEIDGEKLLDKEVQLTVTTLIMAGIESL HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH SGFMAMFGLNLADYPEARSALVADPSLIPDAIEESLRFNTSAQRFKRTLTRDVELHGQVM HHHHHHHCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH KAGDAVILAYGSANRDERMFENPDVYDITRKPRRHLGFGGGVHACLGSMIGRLATQIAYE HCCCEEEEEECCCCCCCHHCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH ELLKAVPDFRRADAPLDWVPSSNFRSPKSLMLEKKA HHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]