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The map label for this gene is rpoE [H]

Identifier: 87199609

GI number: 87199609

Start: 1652488

End: 1653054

Strand: Reverse

Name: rpoE [H]

Synonym: Saro_1592

Alternate gene names: 87199609

Gene position: 1653054-1652488 (Counterclockwise)

Preceding gene: 87199612

Following gene: 87199608

Centisome position: 46.41

GC content: 66.14

Gene sequence:

>567_bases
ATGTTTTCGCTCATGGATGAAACGGATGGCGCGGCCCGTTCTGTCCATGGAAAGGCCAGGAAACTGACGGAAGCATTCGC
AAACGACCCGTTCGCCGACGGACTTCTCGCCCTGCTGCCGCGCCTGAGGCGCTTCGCGGCGGGCCTGTCGCGCGACCGTG
CCGATGCCGACGACCTGTGCCAGGCAACGATCGAGCGCGCGCTCCGCAACCGCGACAAGTGGCAGCAGGGCACGCGTCTG
GATAGCTGGGTGTACCGAATGATGCGCAATATCTGGATAGACGAAACCCGTTCCCGGGCCCGGCGAAGCGAGACTTTCGT
TGCCGAGGAAGCTGGCGCGACCGCCGGGGCCGATGGCGCGCAGGAAGCCCGCGCGCAACTGGGCGACATCGACCGCGCGC
TGGCGACGCTGCCCGACGAACAACGCGAGGCGGTCGTGCTGGTGATGGTCGAAGGCTGGTCCTACAAGGAAGCGGCCGAG
ATCGTCGGCTGTCCCGTAGGCACGCTCAATTCCCGTCTGGTACGCGGGCGCGATGCACTGCTCGCACGGCTTGGAGAAGC
GGCATGA

Upstream 100 bases:

>100_bases
CAAGCTGGCCGGCGGCCGGGCCAGCGGTCGTCGCCATCATCACAAGCGCCATCGCGGTGCGCCAGGGGAAGTATCTCGAA
TTCATCACTTTGAACCATAA

Downstream 100 bases:

>100_bases
AGCCTACGCCGGAACAGATCGCCGCCCTGGCCGATGACCAGCTTGAAGGCGAGGAACTCCTCGCCGTCGCCGCCGCTGTC
GAGGCTGATCCGGAATTGCA

Product: FecI-like sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFSLMDETDGAARSVHGKARKLTEAFANDPFADGLLALLPRLRRFAAGLSRDRADADDLCQATIERALRNRDKWQQGTRL
DSWVYRMMRNIWIDETRSRARRSETFVAEEAGATAGADGAQEARAQLGDIDRALATLPDEQREAVVLVMVEGWSYKEAAE
IVGCPVGTLNSRLVRGRDALLARLGEAA

Sequences:

>Translated_188_residues
MFSLMDETDGAARSVHGKARKLTEAFANDPFADGLLALLPRLRRFAAGLSRDRADADDLCQATIERALRNRDKWQQGTRL
DSWVYRMMRNIWIDETRSRARRSETFVAEEAGATAGADGAQEARAQLGDIDRALATLPDEQREAVVLVMVEGWSYKEAAE
IVGCPVGTLNSRLVRGRDALLARLGEAA
>Mature_188_residues
MFSLMDETDGAARSVHGKARKLTEAFANDPFADGLLALLPRLRRFAAGLSRDRADADDLCQATIERALRNRDKWQQGTRL
DSWVYRMMRNIWIDETRSRARRSETFVAEEAGATAGADGAQEARAQLGDIDRALATLPDEQREAVVLVMVEGWSYKEAAE
IVGCPVGTLNSRLVRGRDALLARLGEAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20778; Mature: 20778

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLMDETDGAARSVHGKARKLTEAFANDPFADGLLALLPRLRRFAAGLSRDRADADDLC
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
QATIERALRNRDKWQQGTRLDSWVYRMMRNIWIDETRSRARRSETFVAEEAGATAGADGA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
QEARAQLGDIDRALATLPDEQREAVVLVMVEGWSYKEAAEIVGCPVGTLNSRLVRGRDAL
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
LARLGEAA
HHHHHCCC
>Mature Secondary Structure
MFSLMDETDGAARSVHGKARKLTEAFANDPFADGLLALLPRLRRFAAGLSRDRADADDLC
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
QATIERALRNRDKWQQGTRLDSWVYRMMRNIWIDETRSRARRSETFVAEEAGATAGADGA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
QEARAQLGDIDRALATLPDEQREAVVLVMVEGWSYKEAAEIVGCPVGTLNSRLVRGRDAL
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
LARLGEAA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]