Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87199238
Identifier: 87199238
GI number: 87199238
Start: 1265710
End: 1266237
Strand: Reverse
Name: 87199238
Synonym: Saro_1216
Alternate gene names: NA
Gene position: 1266237-1265710 (Counterclockwise)
Preceding gene: 87199239
Following gene: 87199237
Centisome position: 35.55
GC content: 67.05
Gene sequence:
>528_bases ATGAAGAAAGCTCTTGCAAGCGCGGCGATCGCCGCTGGCTTGATGGTCGGAGGTTCCGCCTTCGCCCAGTCCGCAGCCAA TACCGACAGCGCGTCGGCTTCGGCCTCGGTCACAATCGTCCGCCCGGTCACGATCACCAAGACCAGCGACCTGGCCTTCG GCCGCATCGTCAAGCCGCGCACCGGCACGGGCACGGTCTCGATCGCCAACAGCAGCAACTCGGTCGTCGCGGGCAGCGGC GCTGTCGCGCTCTCGGGCATCACCACCAGCCGCGCCGCGTTCACGGTCGATGGCGAAGGCGGTCAGGTCGTGACCACGTC GATCCCGTCGACCATGACCCTTTCGGGCAACAATGACTCGATCACGGTCAACCTGTCGCCCGACTTCGGATCGACCGTCA CGCTCTCGGGCTCGTCCGCATCGGCCGGCAGCGCCACGCTCAACGTCGGCGGCAGCTTCGATCTCGCCTCGTCGCGGGCC TCGGGTGCCTACACGGGTTCGTTCACGGTCTCCGTCGCCTACCAGTGA
Upstream 100 bases:
>100_bases CTAGTCCGGCAGGGTCGCCGGCATTGACCGGTAAACGCAAACTGCGCGGACCGGTCCGGGACACCCCGTGGGAACGGGGA CTTGGATAGGGGAAGAAGAC
Downstream 100 bases:
>100_bases CGTGAGCGGGCAAGGGCCGGACGGATGCCGAAGGGGGGAGCAATGAACCGAACGTACTGCATGTCGCGCCGGCTTGTCGC CGCGCGGATCGTCGGAGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MKKALASAAIAAGLMVGGSAFAQSAANTDSASASASVTIVRPVTITKTSDLAFGRIVKPRTGTGTVSIANSSNSVVAGSG AVALSGITTSRAAFTVDGEGGQVVTTSIPSTMTLSGNNDSITVNLSPDFGSTVTLSGSSASAGSATLNVGGSFDLASSRA SGAYTGSFTVSVAYQ
Sequences:
>Translated_175_residues MKKALASAAIAAGLMVGGSAFAQSAANTDSASASASVTIVRPVTITKTSDLAFGRIVKPRTGTGTVSIANSSNSVVAGSG AVALSGITTSRAAFTVDGEGGQVVTTSIPSTMTLSGNNDSITVNLSPDFGSTVTLSGSSASAGSATLNVGGSFDLASSRA SGAYTGSFTVSVAYQ >Mature_175_residues MKKALASAAIAAGLMVGGSAFAQSAANTDSASASASVTIVRPVTITKTSDLAFGRIVKPRTGTGTVSIANSSNSVVAGSG AVALSGITTSRAAFTVDGEGGQVVTTSIPSTMTLSGNNDSITVNLSPDFGSTVTLSGSSASAGSATLNVGGSFDLASSRA SGAYTGSFTVSVAYQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16885; Mature: 16885
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKALASAAIAAGLMVGGSAFAQSAANTDSASASASVTIVRPVTITKTSDLAFGRIVKPR CCHHHHHHHHHHHEEECCHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCEEECCC TGTGTVSIANSSNSVVAGSGAVALSGITTSRAAFTVDGEGGQVVTTSIPSTMTLSGNNDS CCCCEEEEECCCCCEEECCCCEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCE ITVNLSPDFGSTVTLSGSSASAGSATLNVGGSFDLASSRASGAYTGSFTVSVAYQ EEEEECCCCCCEEEEECCCCCCCCEEEECCCCEECCCCCCCCEEECEEEEEEEEC >Mature Secondary Structure MKKALASAAIAAGLMVGGSAFAQSAANTDSASASASVTIVRPVTITKTSDLAFGRIVKPR CCHHHHHHHHHHHEEECCHHHHHCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCEEECCC TGTGTVSIANSSNSVVAGSGAVALSGITTSRAAFTVDGEGGQVVTTSIPSTMTLSGNNDS CCCCEEEEECCCCCEEECCCCEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCE ITVNLSPDFGSTVTLSGSSASAGSATLNVGGSFDLASSRASGAYTGSFTVSVAYQ EEEEECCCCCCEEEEECCCCCCCCEEEECCCCEECCCCCCCCEEECEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA