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The map label for this gene is cydB [H]

Identifier: 87199048

GI number: 87199048

Start: 1064498

End: 1065496

Strand: Direct

Name: cydB [H]

Synonym: Saro_1026

Alternate gene names: 87199048

Gene position: 1064498-1065496 (Clockwise)

Preceding gene: 87199047

Following gene: 87199049

Centisome position: 29.89

GC content: 66.67

Gene sequence:

>999_bases
ATGATCGACCTTACCGTGATCTGGGCGCTGATCATCGCCTTTGCCGTCCTGATGTACGTCGTGATGGATGGCTTCGACCT
TGGCATCGGCATCCTCTTCCCCACATTCGCGCCGGGCCAGGAGCGCGACCAGGCGATGAACGCCATCGCCCCCGTCTGGG
ACGGCAACGAGACCTGGCTGGTGCTCGGCGGAGGTGGCCTGTTCGCTGCGTTCCCGCTTGCCTACGCGATCATCCTTCCC
GCGACCTACCCCCTCATCATCGCCATGCTCCTGGGCCTCGTGTTCCGCGGCGTGGCGTTCGAGTTCCGCTGGCGTGACCC
GCGCCACCGGGCGTTCTGGGACATGGCGTTCTTCGCTGGATCGCTCGTGGCCGCGCTGGCCCAAGGCATCACGCTGGGCG
CGCTGTTGCAGGGCATCCACGTCGAAGGCCGCGCCTATGCCGGCGGCTGGCTCGACTGGCTCTCGCCCTATTCTCTGCTC
ACCGGGGTCGGCGTCGTCGCGGGCTATGCCCTGCTCGGGTCGACGTGGCTTGCGGTGAAGGTCGAAGGCAGCGCCGAGGA
CAAGGCCTACGCCCATGCGCGCCGCGCGGCCTGGGCGACGCTGGCCCTGATGGCCGCCGTCAGCCTCGCGACCCCGTTTC
TCGCTGGTCAATACTTCCAGCGCTGGTTCACCCAGCCGATGATCTACTGGCTTGCTCCGGTGCCGCTGGTCACCGGGGCC
GTTGCCTTCGCGCTGATGCGCTCGCTCGGTGCGCGGCATACGTGGCGGCCCTTCCTGCTCTCGCTGGCGCTGTTCCTGCT
TGGCATGATCGGTCTCGGCGTCTCGATCTGGCCGTGGGTCGTGCCGCAGAGCATCTCGATATGGCAGGCCGCTGCGCCCC
ATCGCAGCCAGGTGTTCATGCTCGTTGGCGTCCTCGCCATTATGCCGCTGATCCTGGGGTATACCGCGTGGGCCTATTGG
GTGTTTCGCGGCAAGGTCGGAACGCATGGCTATCATTGA

Upstream 100 bases:

>100_bases
AAGTGCCGCACCCGCACGAGCCCGGCCCTGAACTCGAAGAGCGCGCGCCGATCCGTTCTGCCGGCATCACCCCCGCCCAG
CAGCAGGAAGGAGCCGCGTG

Downstream 100 bases:

>100_bases
CCCGCGCCTCGATGGGGCGGAGCAGGCGCAGGCCCGCCCCTTGTGGCAGCGCCTTGCGTGGATGGCCGCGATCTGGCTCG
GCAGCGTGCTTGCGCTTGGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MIDLTVIWALIIAFAVLMYVVMDGFDLGIGILFPTFAPGQERDQAMNAIAPVWDGNETWLVLGGGGLFAAFPLAYAIILP
ATYPLIIAMLLGLVFRGVAFEFRWRDPRHRAFWDMAFFAGSLVAALAQGITLGALLQGIHVEGRAYAGGWLDWLSPYSLL
TGVGVVAGYALLGSTWLAVKVEGSAEDKAYAHARRAAWATLALMAAVSLATPFLAGQYFQRWFTQPMIYWLAPVPLVTGA
VAFALMRSLGARHTWRPFLLSLALFLLGMIGLGVSIWPWVVPQSISIWQAAAPHRSQVFMLVGVLAIMPLILGYTAWAYW
VFRGKVGTHGYH

Sequences:

>Translated_332_residues
MIDLTVIWALIIAFAVLMYVVMDGFDLGIGILFPTFAPGQERDQAMNAIAPVWDGNETWLVLGGGGLFAAFPLAYAIILP
ATYPLIIAMLLGLVFRGVAFEFRWRDPRHRAFWDMAFFAGSLVAALAQGITLGALLQGIHVEGRAYAGGWLDWLSPYSLL
TGVGVVAGYALLGSTWLAVKVEGSAEDKAYAHARRAAWATLALMAAVSLATPFLAGQYFQRWFTQPMIYWLAPVPLVTGA
VAFALMRSLGARHTWRPFLLSLALFLLGMIGLGVSIWPWVVPQSISIWQAAAPHRSQVFMLVGVLAIMPLILGYTAWAYW
VFRGKVGTHGYH
>Mature_332_residues
MIDLTVIWALIIAFAVLMYVVMDGFDLGIGILFPTFAPGQERDQAMNAIAPVWDGNETWLVLGGGGLFAAFPLAYAIILP
ATYPLIIAMLLGLVFRGVAFEFRWRDPRHRAFWDMAFFAGSLVAALAQGITLGALLQGIHVEGRAYAGGWLDWLSPYSLL
TGVGVVAGYALLGSTWLAVKVEGSAEDKAYAHARRAAWATLALMAAVSLATPFLAGQYFQRWFTQPMIYWLAPVPLVTGA
VAFALMRSLGARHTWRPFLLSLALFLLGMIGLGVSIWPWVVPQSISIWQAAAPHRSQVFMLVGVLAIMPLILGYTAWAYW
VFRGKVGTHGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=373, Percent_Identity=30.2949061662198, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787213, Length=374, Percent_Identity=31.0160427807487, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36304; Mature: 36304

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLTVIWALIIAFAVLMYVVMDGFDLGIGILFPTFAPGQERDQAMNAIAPVWDGNETWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEE
VLGGGGLFAAFPLAYAIILPATYPLIIAMLLGLVFRGVAFEFRWRDPRHRAFWDMAFFAG
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH
SLVAALAQGITLGALLQGIHVEGRAYAGGWLDWLSPYSLLTGVGVVAGYALLGSTWLAVK
HHHHHHHHCCHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VEGSAEDKAYAHARRAAWATLALMAAVSLATPFLAGQYFQRWFTQPMIYWLAPVPLVTGA
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
VAFALMRSLGARHTWRPFLLSLALFLLGMIGLGVSIWPWVVPQSISIWQAAAPHRSQVFM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCHHHHHH
LVGVLAIMPLILGYTAWAYWVFRGKVGTHGYH
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIDLTVIWALIIAFAVLMYVVMDGFDLGIGILFPTFAPGQERDQAMNAIAPVWDGNETWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEE
VLGGGGLFAAFPLAYAIILPATYPLIIAMLLGLVFRGVAFEFRWRDPRHRAFWDMAFFAG
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHH
SLVAALAQGITLGALLQGIHVEGRAYAGGWLDWLSPYSLLTGVGVVAGYALLGSTWLAVK
HHHHHHHHCCHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VEGSAEDKAYAHARRAAWATLALMAAVSLATPFLAGQYFQRWFTQPMIYWLAPVPLVTGA
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
VAFALMRSLGARHTWRPFLLSLALFLLGMIGLGVSIWPWVVPQSISIWQAAAPHRSQVFM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCCCCHHHHHH
LVGVLAIMPLILGYTAWAYWVFRGKVGTHGYH
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]