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The map label for this gene is cydA [H]

Identifier: 87199047

GI number: 87199047

Start: 1063077

End: 1064498

Strand: Direct

Name: cydA [H]

Synonym: Saro_1025

Alternate gene names: 87199047

Gene position: 1063077-1064498 (Clockwise)

Preceding gene: 87199042

Following gene: 87199048

Centisome position: 29.85

GC content: 65.4

Gene sequence:

>1422_bases
ATGTTCGCAGGGCTTGATCCACAAGGAACCGCGCTGGTTCTCGCGCGAATGCAGTTCGCCTTCACGGTGAGCTTTCACTT
CATCTTTCCGGCCTTTTCCATCGGCCTTGCCAGCTACCTCGCGGTGCTCGAAGCCTTGTGGCTGAAGACGGGCAAGGCGC
TCTACCTCGACCTGTTCCGCTACTGGCTGAAGATATTCTCGGTGGCCTTCGCGATGGGCGTGGTTTCGGGTCTCGTCATG
TCCTACCAGTTCGGCACCAACTGGTCGGTCTTCTCCGAAAAGGTGGGCGGCGTGATCGGGCCGCTGATGGCCTACGAGGT
GCTCACCGCCTTCTTCCTCGAAGCCGGGTTCCTCGGCGTCATGCTGTTCGGCATGAACCGGGTGGGCAAGCGGCTCCACT
TCGCCGCCACGCTGATGGTGGCCGTGGGCACTTTCATCTCGGCCTTCTGGATCCTCTCGGTCAATTCCTGGATGCAGACG
CCGACTGGCTTCGAGATGGGGCCGAACGGCGAATTCCTGCCGGGGCCGAGCTGGGCCGCGATCGTTTTCAACCCCAGCTT
TCCCTACCGCCTCGTCCACACCGTCATCGCCGCCTATCTGACCACCGCCTTCGTCGTCGGAGCGGTCGGCGCGTGGCACC
TGCTGCGCGACCGGGCCAACCTCCACGCCCGCAAGATGTTCTCGATGGCCATGTGGATGGCGGCTCTGGTCGCGCCGGTG
CAGGTGCTGGTGGGCGACATGCATGGCCTCAACACGCTCGAACACCAGCCCGCGAAGGTCATGGCGATGGAGGGGCACTA
CCAGTCCCACCCCGATGGCGCTCCGCTCTACCTGTTCGGCATTCCGGACGACGCGGCGCAGAAGCTCGACTACGCGATCG
CCATCCCCAAGGCGTCGAGCCTCATCCTCAAGCACGATCCGAACGCGCCGCTAGCCGGCCTCGATACCATCGCGCCGGAC
CGGCGCCCGCCGGTATGGATCGTGTTCTGGTCCTTCCGCATCATGGTCGGCCTCGGCTTCCTCATGCTCGGCCTTGGCTT
GTGGAGCCTGTTCGCCCGCTTCCGGAAGCGCCTCTACGACTGGCCCATGCTCCACCGGATGGCGCTGCTGATGGGGCCGT
CGGGTTTCGTCGCGGTCATCGCCGGCTGGGTGACGACCGAGGTCGGCCGCCAGCCCTGGACCGTCTACGGACTCCTCACC
ACGGCTGAATCCGTCAGTCCCATTGCCGCGCCGGCGGTGGCCACCTCGCTTCTGGCGTTCGTCGTCGTCTACTTCGCGGT
CTTCGGCGTCGGCACATGGTATCTCCTGCGCCTGATGCACGAAGTGCCGCACCCGCACGAGCCCGGCCCTGAACTCGAAG
AGCGCGCGCCGATCCGTTCTGCCGGCATCACCCCCGCCCAGCAGCAGGAAGGAGCCGCGTGA

Upstream 100 bases:

>100_bases
ACCGTTCAAACGATAATATCACTTTAGAAAAAGCTCATATATCTGTAGCTTGTGCCCCAGGCGCCACAAGAGACGCCCGA
TCCCATTGCGGGGAGCAACA

Downstream 100 bases:

>100_bases
TGATCGACCTTACCGTGATCTGGGCGCTGATCATCGCCTTTGCCGTCCTGATGTACGTCGTGATGGATGGCTTCGACCTT
GGCATCGGCATCCTCTTCCC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MFAGLDPQGTALVLARMQFAFTVSFHFIFPAFSIGLASYLAVLEALWLKTGKALYLDLFRYWLKIFSVAFAMGVVSGLVM
SYQFGTNWSVFSEKVGGVIGPLMAYEVLTAFFLEAGFLGVMLFGMNRVGKRLHFAATLMVAVGTFISAFWILSVNSWMQT
PTGFEMGPNGEFLPGPSWAAIVFNPSFPYRLVHTVIAAYLTTAFVVGAVGAWHLLRDRANLHARKMFSMAMWMAALVAPV
QVLVGDMHGLNTLEHQPAKVMAMEGHYQSHPDGAPLYLFGIPDDAAQKLDYAIAIPKASSLILKHDPNAPLAGLDTIAPD
RRPPVWIVFWSFRIMVGLGFLMLGLGLWSLFARFRKRLYDWPMLHRMALLMGPSGFVAVIAGWVTTEVGRQPWTVYGLLT
TAESVSPIAAPAVATSLLAFVVVYFAVFGVGTWYLLRLMHEVPHPHEPGPELEERAPIRSAGITPAQQQEGAA

Sequences:

>Translated_473_residues
MFAGLDPQGTALVLARMQFAFTVSFHFIFPAFSIGLASYLAVLEALWLKTGKALYLDLFRYWLKIFSVAFAMGVVSGLVM
SYQFGTNWSVFSEKVGGVIGPLMAYEVLTAFFLEAGFLGVMLFGMNRVGKRLHFAATLMVAVGTFISAFWILSVNSWMQT
PTGFEMGPNGEFLPGPSWAAIVFNPSFPYRLVHTVIAAYLTTAFVVGAVGAWHLLRDRANLHARKMFSMAMWMAALVAPV
QVLVGDMHGLNTLEHQPAKVMAMEGHYQSHPDGAPLYLFGIPDDAAQKLDYAIAIPKASSLILKHDPNAPLAGLDTIAPD
RRPPVWIVFWSFRIMVGLGFLMLGLGLWSLFARFRKRLYDWPMLHRMALLMGPSGFVAVIAGWVTTEVGRQPWTVYGLLT
TAESVSPIAAPAVATSLLAFVVVYFAVFGVGTWYLLRLMHEVPHPHEPGPELEERAPIRSAGITPAQQQEGAA
>Mature_473_residues
MFAGLDPQGTALVLARMQFAFTVSFHFIFPAFSIGLASYLAVLEALWLKTGKALYLDLFRYWLKIFSVAFAMGVVSGLVM
SYQFGTNWSVFSEKVGGVIGPLMAYEVLTAFFLEAGFLGVMLFGMNRVGKRLHFAATLMVAVGTFISAFWILSVNSWMQT
PTGFEMGPNGEFLPGPSWAAIVFNPSFPYRLVHTVIAAYLTTAFVVGAVGAWHLLRDRANLHARKMFSMAMWMAALVAPV
QVLVGDMHGLNTLEHQPAKVMAMEGHYQSHPDGAPLYLFGIPDDAAQKLDYAIAIPKASSLILKHDPNAPLAGLDTIAPD
RRPPVWIVFWSFRIMVGLGFLMLGLGLWSLFARFRKRLYDWPMLHRMALLMGPSGFVAVIAGWVTTEVGRQPWTVYGLLT
TAESVSPIAAPAVATSLLAFVVVYFAVFGVGTWYLLRLMHEVPHPHEPGPELEERAPIRSAGITPAQQQEGAA

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=310, Percent_Identity=37.741935483871, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI87081779, Length=304, Percent_Identity=36.5131578947368, Blast_Score=221, Evalue=7e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51996; Mature: 51996

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]