Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is prs [H]
Identifier: 87198993
GI number: 87198993
Start: 1017201
End: 1018136
Strand: Direct
Name: prs [H]
Synonym: Saro_0971
Alternate gene names: 87198993
Gene position: 1017201-1018136 (Clockwise)
Preceding gene: 87198988
Following gene: 87198995
Centisome position: 28.56
GC content: 65.92
Gene sequence:
>936_bases ATGAAGATCATGGCCGGCAACTCCAATCTGCCGCTCGCCCGCGCCATTTCGGCCTATCTCGAAATGCCGCTGACCGACGC CAGCGTGCGCCGCTTCGCGGACGAGGAGGTTTTCGTCGAAATCCACGAGAACGTGCGTGGCGAAGACGTGTTCGTGGTCC AGTCGACCAGCTATCCGGCGAACGACAACCTGATGGAACTACTGATCTGCATCGACGCGCTGCGCCGTGCATCGGCAAAG CGCATCACGGCGGTGGTTCCGTATTTCGGCTATGCCCGCCAGGACCGCAAGCCGGGGCCGCGCACGCCGATCTCGGCAAA GCTGGTGGCGAACCTCATCACCCAAGCCGGCGCCGACCGCGTCCTGTCGGTCGACCTTCACGCCGGGCAGATCCAGGGCT TCTTCGACATCCCGACCGACAACCTGTTCGCGGCGCCCGTCATGGCCGCGGACATCCAGACGCGCTATGGCGCGCAGGAA CTGATGGTCGTCTCGCCGGACGTCGGCGGCGTGGTCCGCGCCCGCGCGCTGGCCAAGCGGCTCAACAACGCCCCGCTGGC GATCGTCGACAAGCGCCGCGACCGGCCGGGCCAGTCCGAAGTGATGAACATCATCGGCGAAGTGAAGGGGCGCATGTGCA TCCTGATCGACGACATCATCGATTCGGGCGGTACGCTCTGCAACGCGGCGCAGGCGTTGATGGATGCGGGCGCGGTCGGC GTTTCCGCCTACATCACGCACGGCGTCCTTTCGGGCGGCGCGGTTGCGCGCGTGGCTGGGTCGGCGCTCAAGGAACTGGT CATCACCGACACGATCATGCCGACGGAAGCCACCGCATCGTGCGACCGCATCCGCGTGTTGACGATCGCGCCGCTGATTG GCGAGGCGGTCCGCCGCATCGCCGATGAAAGCTCGGTGTCGAGCCTTTTCGACTGA
Upstream 100 bases:
>100_bases GAGCGTTACGTAGGCTTCAACGCCCGACCACCGCAAGAGTTGCAAACCTGTCATCTTGGGCTAAGGGCCGCAGGGGATCG AATCCGAGGGAATCGCACGC
Downstream 100 bases:
>100_bases GAGCGCTGATCTGGCGGATGACGTGTTAAGGGGCCGGAATTCCGGCCCCTTTTCATTTGGCGCGCTGCAATTGCAGTTCC AGGCCCTTGCGGTCGGTCTG
Product: ribose-phosphate pyrophosphokinase
Products: NA
Alternate protein names: RPPK; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase [H]
Number of amino acids: Translated: 311; Mature: 311
Protein sequence:
>311_residues MKIMAGNSNLPLARAISAYLEMPLTDASVRRFADEEVFVEIHENVRGEDVFVVQSTSYPANDNLMELLICIDALRRASAK RITAVVPYFGYARQDRKPGPRTPISAKLVANLITQAGADRVLSVDLHAGQIQGFFDIPTDNLFAAPVMAADIQTRYGAQE LMVVSPDVGGVVRARALAKRLNNAPLAIVDKRRDRPGQSEVMNIIGEVKGRMCILIDDIIDSGGTLCNAAQALMDAGAVG VSAYITHGVLSGGAVARVAGSALKELVITDTIMPTEATASCDRIRVLTIAPLIGEAVRRIADESSVSSLFD
Sequences:
>Translated_311_residues MKIMAGNSNLPLARAISAYLEMPLTDASVRRFADEEVFVEIHENVRGEDVFVVQSTSYPANDNLMELLICIDALRRASAK RITAVVPYFGYARQDRKPGPRTPISAKLVANLITQAGADRVLSVDLHAGQIQGFFDIPTDNLFAAPVMAADIQTRYGAQE LMVVSPDVGGVVRARALAKRLNNAPLAIVDKRRDRPGQSEVMNIIGEVKGRMCILIDDIIDSGGTLCNAAQALMDAGAVG VSAYITHGVLSGGAVARVAGSALKELVITDTIMPTEATASCDRIRVLTIAPLIGEAVRRIADESSVSSLFD >Mature_311_residues MKIMAGNSNLPLARAISAYLEMPLTDASVRRFADEEVFVEIHENVRGEDVFVVQSTSYPANDNLMELLICIDALRRASAK RITAVVPYFGYARQDRKPGPRTPISAKLVANLITQAGADRVLSVDLHAGQIQGFFDIPTDNLFAAPVMAADIQTRYGAQE LMVVSPDVGGVVRARALAKRLNNAPLAIVDKRRDRPGQSEVMNIIGEVKGRMCILIDDIIDSGGTLCNAAQALMDAGAVG VSAYITHGVLSGGAVARVAGSALKELVITDTIMPTEATASCDRIRVLTIAPLIGEAVRRIADESSVSSLFD
Specific function: Utilized by both the de novo and the salvage pathways by which endogenously formed or exogenously added pyrimidine, purine, or pyridine bases are converted to the corresponding ribonucleoside monophosphates. [C]
COG id: COG0462
COG function: function code FE; Phosphoribosylpyrophosphate synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ribose-phosphate pyrophosphokinase family [H]
Homologues:
Organism=Homo sapiens, GI4506127, Length=311, Percent_Identity=45.3376205787781, Blast_Score=281, Evalue=6e-76, Organism=Homo sapiens, GI4506129, Length=309, Percent_Identity=44.336569579288, Blast_Score=278, Evalue=7e-75, Organism=Homo sapiens, GI28557709, Length=311, Percent_Identity=44.3729903536978, Blast_Score=273, Evalue=2e-73, Organism=Homo sapiens, GI84875539, Length=312, Percent_Identity=43.9102564102564, Blast_Score=272, Evalue=3e-73, Organism=Homo sapiens, GI4506133, Length=342, Percent_Identity=32.7485380116959, Blast_Score=163, Evalue=2e-40, Organism=Homo sapiens, GI194018537, Length=345, Percent_Identity=32.1739130434783, Blast_Score=151, Evalue=9e-37, Organism=Homo sapiens, GI310128524, Length=144, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI310115209, Length=144, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI310118259, Length=144, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI310119946, Length=144, Percent_Identity=30.5555555555556, Blast_Score=77, Evalue=1e-14, Organism=Escherichia coli, GI1787458, Length=312, Percent_Identity=53.8461538461538, Blast_Score=338, Evalue=3e-94, Organism=Caenorhabditis elegans, GI25149168, Length=311, Percent_Identity=44.6945337620579, Blast_Score=279, Evalue=2e-75, Organism=Caenorhabditis elegans, GI17554702, Length=311, Percent_Identity=44.6945337620579, Blast_Score=278, Evalue=2e-75, Organism=Caenorhabditis elegans, GI71989924, Length=311, Percent_Identity=44.6945337620579, Blast_Score=277, Evalue=6e-75, Organism=Caenorhabditis elegans, GI17554704, Length=309, Percent_Identity=44.6601941747573, Blast_Score=276, Evalue=1e-74, Organism=Caenorhabditis elegans, GI17570245, Length=337, Percent_Identity=33.5311572700297, Blast_Score=185, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6320946, Length=312, Percent_Identity=43.9102564102564, Blast_Score=256, Evalue=5e-69, Organism=Saccharomyces cerevisiae, GI6321776, Length=311, Percent_Identity=41.1575562700965, Blast_Score=244, Evalue=1e-65, Organism=Saccharomyces cerevisiae, GI6319403, Length=313, Percent_Identity=43.4504792332268, Blast_Score=244, Evalue=2e-65, Organism=Saccharomyces cerevisiae, GI6322667, Length=196, Percent_Identity=41.8367346938776, Blast_Score=148, Evalue=1e-36, Organism=Saccharomyces cerevisiae, GI6324511, Length=111, Percent_Identity=39.6396396396396, Blast_Score=92, Evalue=2e-19, Organism=Drosophila melanogaster, GI21355239, Length=311, Percent_Identity=44.6945337620579, Blast_Score=266, Evalue=2e-71, Organism=Drosophila melanogaster, GI45551540, Length=334, Percent_Identity=41.6167664670659, Blast_Score=253, Evalue=1e-67, Organism=Drosophila melanogaster, GI24651458, Length=352, Percent_Identity=31.25, Blast_Score=171, Evalue=6e-43, Organism=Drosophila melanogaster, GI24651456, Length=352, Percent_Identity=31.25, Blast_Score=171, Evalue=6e-43, Organism=Drosophila melanogaster, GI281362873, Length=352, Percent_Identity=31.25, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI24651454, Length=352, Percent_Identity=31.25, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI24651462, Length=370, Percent_Identity=30.2702702702703, Blast_Score=163, Evalue=1e-40, Organism=Drosophila melanogaster, GI24651464, Length=370, Percent_Identity=30.2702702702703, Blast_Score=163, Evalue=1e-40, Organism=Drosophila melanogaster, GI45552010, Length=370, Percent_Identity=30.2702702702703, Blast_Score=163, Evalue=1e-40,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000842 - InterPro: IPR005946 - InterPro: IPR000836 [H]
Pfam domain/function: PF00156 Pribosyltran [H]
EC number: =2.7.6.1 [H]
Molecular weight: Translated: 33248; Mature: 33248
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00103 PUR_PYR_PR_TRANSFER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIMAGNSNLPLARAISAYLEMPLTDASVRRFADEEVFVEIHENVRGEDVFVVQSTSYPA CEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCC NDNLMELLICIDALRRASAKRITAVVPYFGYARQDRKPGPRTPISAKLVANLITQAGADR CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC VLSVDLHAGQIQGFFDIPTDNLFAAPVMAADIQTRYGAQELMVVSPDVGGVVRARALAKR EEEEEECCCCCCEEEECCCCCEEECHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH LNNAPLAIVDKRRDRPGQSEVMNIIGEVKGRMCILIDDIIDSGGTLCNAAQALMDAGAVG HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCHH VSAYITHGVLSGGAVARVAGSALKELVITDTIMPTEATASCDRIRVLTIAPLIGEAVRRI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH ADESSVSSLFD HCHHHHHHHCC >Mature Secondary Structure MKIMAGNSNLPLARAISAYLEMPLTDASVRRFADEEVFVEIHENVRGEDVFVVQSTSYPA CEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCC NDNLMELLICIDALRRASAKRITAVVPYFGYARQDRKPGPRTPISAKLVANLITQAGADR CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC VLSVDLHAGQIQGFFDIPTDNLFAAPVMAADIQTRYGAQELMVVSPDVGGVVRARALAKR EEEEEECCCCCCEEEECCCCCEEECHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH LNNAPLAIVDKRRDRPGQSEVMNIIGEVKGRMCILIDDIIDSGGTLCNAAQALMDAGAVG HCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCHH VSAYITHGVLSGGAVARVAGSALKELVITDTIMPTEATASCDRIRVLTIAPLIGEAVRRI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH ADESSVSSLFD HCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]