Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is yfgE [C]
Identifier: 87198923
GI number: 87198923
Start: 958095
End: 958709
Strand: Direct
Name: yfgE [C]
Synonym: Saro_0901
Alternate gene names: 87198923
Gene position: 958095-958709 (Clockwise)
Preceding gene: 87198922
Following gene: 87198924
Centisome position: 26.9
GC content: 66.67
Gene sequence:
>615_bases ATGTCTTCGCAGATCGCCCTTCCGCTGGTGACCGCGCGCGGTTCGGAGACCGTGATCATGGGCCCGTCGCTGGTGCCTGC GATCAACGCCCTGCAATCGGCCGATAGCTGGCCGTTCCGGACGGCGATCCTTGCCGGGCCGCCGCGTTCGGGCAAGAGCC TGCTGGCGCGCTGGTTTGCCGAAAGCGGGGCAGGCGACGTGGTGGACGGGGCCGATTCGCTGCCGGAGGACGAGGTGTTC CACCGCTGGAACCGCGCCCAGGCGGAGGGGCGACCGCTTCTGCTGGTCTGCGACCGGGCGCCGGGGCAATGGAAGATCGC GCTGCCCGACCTGGCATCGCGGCTTGGCGCGGCGCTGCTGATCGAGATCGGCCCGCCCGACGACGAACTGATCGCGGGCC TGATCATGGAACATTCCATGCGGCGAGGGCTCGTCATCGGGGACGCGGTGCTTGCGTATCTGTTGCCCAGGGTGGAACGC AGTCACGCCGGAATCGAGTTGCTTATTGAAACTCTTGACCGTCTGTCTCTTGAGCGTAAATCACCCGTCACCATATCCCT GGTACGCGACGCGATCGCGGAGCGGACCGGGGCATTCCAGCCGCGCTTGCTTTGA
Upstream 100 bases:
>100_bases GGCGGCGCTGCGCGCACAGGGTTGGCGCGTGACGGTGGGCGCGGGCGCTCTTTCGATTCGCAAGTAAACTCTTTGCGAAA CTGAGCGTATAATTTCTGTC
Downstream 100 bases:
>100_bases GACGGCTTTAGAGAGAGAATCAGGGGCATGTTCAACGGCCTGATCGCCTATCTGGACTCGATCCGCTCGCGCGATCCCGC GCCGCGATCGCGTTGGGAAA
Product: ATPase
Products: NA
Alternate protein names: DNAA-Related Protein; Regulatory Inactivation Of DNAA Hda Protein; ATPase; DNA Replication Initiation Factor; DNA Replication Initiation ATPase; Chromosomal Replication Initiator Protein DNAA; Chromosomal Replication Initiator; DNAA-Like Protein; ATPase Involved In DNA Replication Initiation; Chromosomal Replication Initiator DNAa; DNA Replication Initiation ATPase Protein; DNAA Regulatory Inactivator Hda; DNAA-Like Protein Hda
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSSQIALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFAESGAGDVVDGADSLPEDEVF HRWNRAQAEGRPLLLVCDRAPGQWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVER SHAGIELLIETLDRLSLERKSPVTISLVRDAIAERTGAFQPRLL
Sequences:
>Translated_204_residues MSSQIALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFAESGAGDVVDGADSLPEDEVF HRWNRAQAEGRPLLLVCDRAPGQWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVER SHAGIELLIETLDRLSLERKSPVTISLVRDAIAERTGAFQPRLL >Mature_203_residues SSQIALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFAESGAGDVVDGADSLPEDEVFH RWNRAQAEGRPLLLVCDRAPGQWKIALPDLASRLGAALLIEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERS HAGIELLIETLDRLSLERKSPVTISLVRDAIAERTGAFQPRLL
Specific function: Unknown
COG id: COG0593
COG function: function code L; ATPase involved in DNA replication initiation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21994; Mature: 21863
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSQIALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFA CCCCEEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHH ESGAGDVVDGADSLPEDEVFHRWNRAQAEGRPLLLVCDRAPGQWKIALPDLASRLGAALL HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHCCEEEE IEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERSHAGIELLIETLDRLSLERK EEECCCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC SPVTISLVRDAIAERTGAFQPRLL CCEEHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SSQIALPLVTARGSETVIMGPSLVPAINALQSADSWPFRTAILAGPPRSGKSLLARWFA CCCEEEEEEECCCCCEEEECCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHH ESGAGDVVDGADSLPEDEVFHRWNRAQAEGRPLLLVCDRAPGQWKIALPDLASRLGAALL HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHCCEEEE IEIGPPDDELIAGLIMEHSMRRGLVIGDAVLAYLLPRVERSHAGIELLIETLDRLSLERK EEECCCCHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC SPVTISLVRDAIAERTGAFQPRLL CCEEHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA