| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is glcB [H]
Identifier: 87198907
GI number: 87198907
Start: 939719
End: 941863
Strand: Direct
Name: glcB [H]
Synonym: Saro_0885
Alternate gene names: 87198907
Gene position: 939719-941863 (Clockwise)
Preceding gene: 87198902
Following gene: 87198912
Centisome position: 26.38
GC content: 66.43
Gene sequence:
>2145_bases ATGGACATGGGTGAAATGAACGGACGTATCGAGCGCAGCGGGCTTCAGGTCGACGCGAAGCTGGCCACTTTCATCGACGG CGAGGTTCTCGGCCCGCTCGGCATTCAGGCCGACGCATTCTGGCAGGGCTTCGCGGCGCTTGTCGGCCACTTTACCCCGG TAAACCGCCAGCTTCTGGTGAAGCGCGATTCCCTCCAGGCGCTGATCGATTCCTGGCACCGCGAGCGTCGGGGCAAGCCC ATCCACGCGCACGAGTACCGCGCCTTCCTGAGCGAGATCGGCTATCTCGTGCCCGAGCCGGACGACTTCCTGATCGGAAC CGAAAACGTCGACCGAGAGATCGCGTCGATGGCGGGGCCGCAGCTCGTCGTGCCGGTCCTCAACGACCGGTTTGTCCTTA ATGCCGCGAACGCGCGCTGGGGCAGCCTGTATGACGCATGGTATGGCACCGACGCGCTCGATGCGCCGCCGGCCCGTCCG GGTGGTTACGACAAGGAACGCGGGGCCGCGGTCGTCGCCGCCGGACGCGCATTCCTCGACCTGACGTTCCCTCTCGACAG CGCGAGCTGGTCCGACTGGGATGGCGAAGGCGTGCCGCCGCTGTGCGACGCGGACCAGTTCGCCGGGACGAAGCCCGGGG GCATCCTGCTTTGCAACAATGGCCTGCACGTCGAGATCGTGCTCGACCGCGCGCACCCGGTCGGCGCAGACGACAAGGCG GGCATTGCCGACATCGTGATGGAAGCGGCGCTGACGACCATCGTCGATCTCGAGGATTCGGTTGCGGCGGTCGACGCCGA GGACAAGCTGCTGGCCTATCGCAACTGGCTGGGCCTGATGCGCGGCGACCTGGAGGCGAGCTTCCAGAAGGGCGGCAGGA CGCTGACCCGCGCGCTGGAGGCTGACCGCGAGTGGACTTCGGCCAAGGGCGAGCCGCTGACCCTGCCGGGGCGCAGCCTG CTGTTCGTGCGCAACGTCGGACACCTGATGACCAACCCTGCGATCCTGCTTCCCGATGGCAGCGAGATTCCCGAAGGGAT CATGGATGCGGTTGTGACTTCGGCCATCGCGATGCACGACATCAGGGGGCTGGGCCGCCATCGCAACAGCCGCGCGGGCA GCATCTATATCGTGAAGCCCAAGATGCACGGGCCGGAAGAGGTCGGCTTCACCAACGATCTGTTCAACGCGGTCGAGGAC CTGCTCGGGCTGGATCGCCACACGGTCAAGGTCGGGGTGATGGACGAGGAGCGCCGCACTTCGGCCAACCTCGCCGCGTG CATCCGCGCGGTGAAGGACCGTATCGTCTTCATCAACACCGGCTTCCTCGACCGTACCGGCGACGAGATCCACACCTCGA TGCAGGCGGGGCCGATGATCCGCAAGGGTGCGATCAAGGGGTCGGGCTGGATCGCCGCCTACGAGAAGCGCAACGTCTGC ATCGGCCTTGCGCACGGGCTTTCCGGCAAGGCGCAGATCGGCAAGGGCATGTGGGCCGCGCCCGACATGATGCACGACAT GATGCAGCAGAAGATCGCGCACCCGAAGACCGGCGCGAACACCGCCTGGGTGCCTTCGCCCACGGCAGCCACGCTGCATG CCATGCACTACCACCAGGTCGCGGTGTTCGACGTGCAGCGCGAAGTGGCGCAGGAGAAGACGCCGGGGCTCGACGCGCTG CTCGCGATTCCGCTGGCGGAGGGGACCAACTGGTCGGCCGAGGAAGTGCGCGAGGAGCTGGACAACAACGCGCAAGGCCT GCTCGGCTATGTCGTGCGCTGGATCGACCAGGGCGTCGGCTGTTCGAAGGTGCCCGACATCAACGACGTCGGCCTGATGG AAGACCGCGCGACGCTGCGCATTTCCAGCCAGCACATGGCCAACTGGTTGCTGCACGGCGTGGCCACCGGTGAGCAGGTG ATGGACAGCCTCAAACGCATGGCGGCCAAGGTCGATGCGCAGAACGCCGGCGATCCGCTCTATGAGCCGATGGCCGGACG CTGGGAGGAAAGCTTTGCCTTCCGCGCCGCCTGCGATCTCGTGTTCAACGGGGTGGAACAGCCCAACGGCTATACCGAGC CGCTGCTGCACGCGTGGCGCCTGAAGAAGAAGGCGGCGGTGGGGAAGGTGGCCGAACCGGCCTGA
Upstream 100 bases:
>100_bases CAATGCAGGATCATGCATAGCCTTGGGCCGTTCCTCCCCAGGTTCATCATCGGATTCGGCACTTGCGGCGTTTGCCGCGG GCGCAGGTTTATGTGAGCGA
Downstream 100 bases:
>100_bases GCCGCCGACGGAGCGCGGCTGCCTACTTCGTCAGCAGCCGCGCGATCGCCACGAAATCTTCGACGCTGAGCGTTTCGGCG CGGCGTTGCGGATCGATGCC
Product: malate synthase G
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 714; Mature: 714
Protein sequence:
>714_residues MDMGEMNGRIERSGLQVDAKLATFIDGEVLGPLGIQADAFWQGFAALVGHFTPVNRQLLVKRDSLQALIDSWHRERRGKP IHAHEYRAFLSEIGYLVPEPDDFLIGTENVDREIASMAGPQLVVPVLNDRFVLNAANARWGSLYDAWYGTDALDAPPARP GGYDKERGAAVVAAGRAFLDLTFPLDSASWSDWDGEGVPPLCDADQFAGTKPGGILLCNNGLHVEIVLDRAHPVGADDKA GIADIVMEAALTTIVDLEDSVAAVDAEDKLLAYRNWLGLMRGDLEASFQKGGRTLTRALEADREWTSAKGEPLTLPGRSL LFVRNVGHLMTNPAILLPDGSEIPEGIMDAVVTSAIAMHDIRGLGRHRNSRAGSIYIVKPKMHGPEEVGFTNDLFNAVED LLGLDRHTVKVGVMDEERRTSANLAACIRAVKDRIVFINTGFLDRTGDEIHTSMQAGPMIRKGAIKGSGWIAAYEKRNVC IGLAHGLSGKAQIGKGMWAAPDMMHDMMQQKIAHPKTGANTAWVPSPTAATLHAMHYHQVAVFDVQREVAQEKTPGLDAL LAIPLAEGTNWSAEEVREELDNNAQGLLGYVVRWIDQGVGCSKVPDINDVGLMEDRATLRISSQHMANWLLHGVATGEQV MDSLKRMAAKVDAQNAGDPLYEPMAGRWEESFAFRAACDLVFNGVEQPNGYTEPLLHAWRLKKKAAVGKVAEPA
Sequences:
>Translated_714_residues MDMGEMNGRIERSGLQVDAKLATFIDGEVLGPLGIQADAFWQGFAALVGHFTPVNRQLLVKRDSLQALIDSWHRERRGKP IHAHEYRAFLSEIGYLVPEPDDFLIGTENVDREIASMAGPQLVVPVLNDRFVLNAANARWGSLYDAWYGTDALDAPPARP GGYDKERGAAVVAAGRAFLDLTFPLDSASWSDWDGEGVPPLCDADQFAGTKPGGILLCNNGLHVEIVLDRAHPVGADDKA GIADIVMEAALTTIVDLEDSVAAVDAEDKLLAYRNWLGLMRGDLEASFQKGGRTLTRALEADREWTSAKGEPLTLPGRSL LFVRNVGHLMTNPAILLPDGSEIPEGIMDAVVTSAIAMHDIRGLGRHRNSRAGSIYIVKPKMHGPEEVGFTNDLFNAVED LLGLDRHTVKVGVMDEERRTSANLAACIRAVKDRIVFINTGFLDRTGDEIHTSMQAGPMIRKGAIKGSGWIAAYEKRNVC IGLAHGLSGKAQIGKGMWAAPDMMHDMMQQKIAHPKTGANTAWVPSPTAATLHAMHYHQVAVFDVQREVAQEKTPGLDAL LAIPLAEGTNWSAEEVREELDNNAQGLLGYVVRWIDQGVGCSKVPDINDVGLMEDRATLRISSQHMANWLLHGVATGEQV MDSLKRMAAKVDAQNAGDPLYEPMAGRWEESFAFRAACDLVFNGVEQPNGYTEPLLHAWRLKKKAAVGKVAEPA >Mature_714_residues MDMGEMNGRIERSGLQVDAKLATFIDGEVLGPLGIQADAFWQGFAALVGHFTPVNRQLLVKRDSLQALIDSWHRERRGKP IHAHEYRAFLSEIGYLVPEPDDFLIGTENVDREIASMAGPQLVVPVLNDRFVLNAANARWGSLYDAWYGTDALDAPPARP GGYDKERGAAVVAAGRAFLDLTFPLDSASWSDWDGEGVPPLCDADQFAGTKPGGILLCNNGLHVEIVLDRAHPVGADDKA GIADIVMEAALTTIVDLEDSVAAVDAEDKLLAYRNWLGLMRGDLEASFQKGGRTLTRALEADREWTSAKGEPLTLPGRSL LFVRNVGHLMTNPAILLPDGSEIPEGIMDAVVTSAIAMHDIRGLGRHRNSRAGSIYIVKPKMHGPEEVGFTNDLFNAVED LLGLDRHTVKVGVMDEERRTSANLAACIRAVKDRIVFINTGFLDRTGDEIHTSMQAGPMIRKGAIKGSGWIAAYEKRNVC IGLAHGLSGKAQIGKGMWAAPDMMHDMMQQKIAHPKTGANTAWVPSPTAATLHAMHYHQVAVFDVQREVAQEKTPGLDAL LAIPLAEGTNWSAEEVREELDNNAQGLLGYVVRWIDQGVGCSKVPDINDVGLMEDRATLRISSQHMANWLLHGVATGEQV MDSLKRMAAKVDAQNAGDPLYEPMAGRWEESFAFRAACDLVFNGVEQPNGYTEPLLHAWRLKKKAAVGKVAEPA
Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]
COG id: COG2225
COG function: function code C; Malate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malate synthase family. GlcB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789348, Length=725, Percent_Identity=56, Blast_Score=818, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011076 - InterPro: IPR001465 - InterPro: IPR006253 [H]
Pfam domain/function: PF01274 Malate_synthase [H]
EC number: =2.3.3.9 [H]
Molecular weight: Translated: 77691; Mature: 77691
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMGEMNGRIERSGLQVDAKLATFIDGEVLGPLGIQADAFWQGFAALVGHFTPVNRQLLV CCCCCCCCEEECCCCEEEEHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE KRDSLQALIDSWHRERRGKPIHAHEYRAFLSEIGYLVPEPDDFLIGTENVDREIASMAGP EHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCC QLVVPVLNDRFVLNAANARWGSLYDAWYGTDALDAPPARPGGYDKERGAAVVAAGRAFLD EEEEEECCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE LTFPLDSASWSDWDGEGVPPLCDADQFAGTKPGGILLCNNGLHVEIVLDRAHPVGADDKA EEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCC GIADIVMEAALTTIVDLEDSVAAVDAEDKLLAYRNWLGLMRGDLEASFQKGGRTLTRALE CHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ADREWTSAKGEPLTLPGRSLLFVRNVGHLMTNPAILLPDGSEIPEGIMDAVVTSAIAMHD HCHHHHCCCCCEEECCCCCEEEEEHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHH IRGLGRHRNSRAGSIYIVKPKMHGPEEVGFTNDLFNAVEDLLGLDRHTVKVGVMDEERRT HHHHHCCCCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHH SANLAACIRAVKDRIVFINTGFLDRTGDEIHTSMQAGPMIRKGAIKGSGWIAAYEKRNVC HHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCEE IGLAHGLSGKAQIGKGMWAAPDMMHDMMQQKIAHPKTGANTAWVPSPTAATLHAMHYHQV EEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHEE AVFDVQREVAQEKTPGLDALLAIPLAEGTNWSAEEVREELDNNAQGLLGYVVRWIDQGVG HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC CSKVPDINDVGLMEDRATLRISSQHMANWLLHGVATGEQVMDSLKRMAAKVDAQNAGDPL CCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCH YEPMAGRWEESFAFRAACDLVFNGVEQPNGYTEPLLHAWRLKKKAAVGKVAEPA HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MDMGEMNGRIERSGLQVDAKLATFIDGEVLGPLGIQADAFWQGFAALVGHFTPVNRQLLV CCCCCCCCEEECCCCEEEEHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEE KRDSLQALIDSWHRERRGKPIHAHEYRAFLSEIGYLVPEPDDFLIGTENVDREIASMAGP EHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCC QLVVPVLNDRFVLNAANARWGSLYDAWYGTDALDAPPARPGGYDKERGAAVVAAGRAFLD EEEEEECCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE LTFPLDSASWSDWDGEGVPPLCDADQFAGTKPGGILLCNNGLHVEIVLDRAHPVGADDKA EEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCC GIADIVMEAALTTIVDLEDSVAAVDAEDKLLAYRNWLGLMRGDLEASFQKGGRTLTRALE CHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ADREWTSAKGEPLTLPGRSLLFVRNVGHLMTNPAILLPDGSEIPEGIMDAVVTSAIAMHD HCHHHHCCCCCEEECCCCCEEEEEHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHH IRGLGRHRNSRAGSIYIVKPKMHGPEEVGFTNDLFNAVEDLLGLDRHTVKVGVMDEERRT HHHHHCCCCCCCCEEEEECCCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHH SANLAACIRAVKDRIVFINTGFLDRTGDEIHTSMQAGPMIRKGAIKGSGWIAAYEKRNVC HHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCEEEEECCCEE IGLAHGLSGKAQIGKGMWAAPDMMHDMMQQKIAHPKTGANTAWVPSPTAATLHAMHYHQV EEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHEE AVFDVQREVAQEKTPGLDALLAIPLAEGTNWSAEEVREELDNNAQGLLGYVVRWIDQGVG HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC CSKVPDINDVGLMEDRATLRISSQHMANWLLHGVATGEQVMDSLKRMAAKVDAQNAGDPL CCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCH YEPMAGRWEESFAFRAACDLVFNGVEQPNGYTEPLLHAWRLKKKAAVGKVAEPA HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA