Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198821
Identifier: 87198821
GI number: 87198821
Start: 849016
End: 850071
Strand: Direct
Name: 87198821
Synonym: Saro_0799
Alternate gene names: NA
Gene position: 849016-850071 (Clockwise)
Preceding gene: 87198820
Following gene: 87198822
Centisome position: 23.84
GC content: 63.35
Gene sequence:
>1056_bases ATGACACAAGACCTTAAGACCGGCGGCGAGCAGGGCTACCTGCGCATCGCCACCGAGGAAGCCTTCGCCACGCGCGAGAT CATCGACGTCTACCTGCGCATGATCCGCGATGGCACTGCCGACAAGGGCATGGTCTCGCTCTGGGGCTTCTACGCCCAGT CCCCCTCAGAGCGCGCCACCCAGATCCTCGAACGCCTGCTCGATCTTGGCGAGCGCCGCATCGCCGACATGGACGCGACC GGCATCGACAAGGCTATCCTCGCGCTGACCTCGCCCGGCGTCCAGCCGCTGCACGACCTTGACGAGGCCAGGACGCTCGC CACCCGCGCCAACGACACGCTTGCCGACGCGTGCCAAAAGTACCCAGACCGCTTCATCGGCATGGGCACCGTCGCCCCGC AGGACCCGGAATGGTCCGCGCGCGAGATCCATCGTGGTGCCAGGGAACTGGGCTTCAAGGGCATCCAGATCAACAGCCAC ACGCAAGGGCGCTACCTCGACGAGGAGTTCTTCGACCCGATCTTCCGCGCCCTCGTTGAAGTCGACCAGCCGCTCTACAT CCACCCTGCCACTTCGCCCGATTCCATGATCGACCCGATGCTCGAAGCGGGCCTCGACGGCGCCATCTTCGGCTTCGGCG TGGAGACGGGCATGCACCTGCTGCGCCTCATCACCATCGGCATCTTCGACAAGTATCCCAGCCTTCAGATCATGGTCGGC CACATGGGCGAGGCGCTGCCCTACTGGCTCTACCGCCTGGACTACATGCACCAGGCCGGTGTCCGCTCGCAGCGCTACGA ACGCATGAAGCCCCTGAAGAAGACCATCGAGGGCTACCTCAAGTCCAACGTCCTCGTCACCAATTCGGGCGTCGCGTGGG AACCTGCGATCAAGTTCTGCCAGCAGGTCATGGGCGAGGACCGCGTTATGTACGCGATGGACTACCCCTACCAGTACGTT GCCGACGAGGTGCGCGCGATGGACGCCATGGACATGAGTGCGCAAACGAAGAAGAAGTTCTTCCAGACCAACGCGGAGAA GTGGTTCAAGCTTTGA
Upstream 100 bases:
>100_bases CGCTTTGCGCGGCCGGATCGCATGAATCACATCGGCAGTCTCACGCTCACCGTCCGCAGGTGACGCGGCGCAGGCTGCCC TTCCCGGGAAGGAAGCCTGC
Downstream 100 bases:
>100_bases CCAGCGCCGGGAGGGAGAGCCTATGACCACAGAACCGCGCCGCTCACTGGCCCCCGGCGCATGGTACGCGCTCGTCCTCG TCGCGCTGACCAATGCGATG
Product: amidohydrolase 2
Products: NA
Alternate protein names: Amidohydrolase; Amidohydrolase/Decarboxylase; Metal-Dependent Hydrolase; Amidohydrolase Family Protein; 4-Oxalomesaconate Hydratase; 2-Amino-3-Carboxylmuconate-6-Semialdehyde Decarboxylase; O-Pyrocatechuate Decarboxylase; 2-Amino-3-Carboxymuconate-6-Semialdehyde Decarboxylase; Hydrolase; 2-Amino-3-Carboxymuconate 6-Semialdehyde Decarboxylase; 2-Amino-3-Carboxymuconate-6- Semialdehyde Decarboxylase; Tryptophan 2 3-Dioxygenase; Decarboxylase; 2 3-Dihydroxybenzoic Acid Decarboxylase; Amidohydrolase Family; Amidase; 5-Carboxyvanillate Decarboxylase; Metal-Dependent Hydrolase Of TIM-Barrel Fold; Barh Protein; Amidohydrolase 2 Family Protein; Metal Dependent Hydrolase; 5-Carboxy-2-Hydroxymuconate-6-Semialdehyde Decarboxylase
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MTQDLKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQSPSERATQILERLLDLGERRIADMDAT GIDKAILALTSPGVQPLHDLDEARTLATRANDTLADACQKYPDRFIGMGTVAPQDPEWSAREIHRGARELGFKGIQINSH TQGRYLDEEFFDPIFRALVEVDQPLYIHPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVG HMGEALPYWLYRLDYMHQAGVRSQRYERMKPLKKTIEGYLKSNVLVTNSGVAWEPAIKFCQQVMGEDRVMYAMDYPYQYV ADEVRAMDAMDMSAQTKKKFFQTNAEKWFKL
Sequences:
>Translated_351_residues MTQDLKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQSPSERATQILERLLDLGERRIADMDAT GIDKAILALTSPGVQPLHDLDEARTLATRANDTLADACQKYPDRFIGMGTVAPQDPEWSAREIHRGARELGFKGIQINSH TQGRYLDEEFFDPIFRALVEVDQPLYIHPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVG HMGEALPYWLYRLDYMHQAGVRSQRYERMKPLKKTIEGYLKSNVLVTNSGVAWEPAIKFCQQVMGEDRVMYAMDYPYQYV ADEVRAMDAMDMSAQTKKKFFQTNAEKWFKL >Mature_350_residues TQDLKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQSPSERATQILERLLDLGERRIADMDATG IDKAILALTSPGVQPLHDLDEARTLATRANDTLADACQKYPDRFIGMGTVAPQDPEWSAREIHRGARELGFKGIQINSHT QGRYLDEEFFDPIFRALVEVDQPLYIHPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVGH MGEALPYWLYRLDYMHQAGVRSQRYERMKPLKKTIEGYLKSNVLVTNSGVAWEPAIKFCQQVMGEDRVMYAMDYPYQYVA DEVRAMDAMDMSAQTKKKFFQTNAEKWFKL
Specific function: Unknown
COG id: COG2159
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI109715856, Length=280, Percent_Identity=27.1428571428571, Blast_Score=108, Evalue=7e-24, Organism=Caenorhabditis elegans, GI71995651, Length=280, Percent_Identity=25, Blast_Score=85, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39852; Mature: 39721
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQDLKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQSPSERAT CCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHH QILERLLDLGERRIADMDATGIDKAILALTSPGVQPLHDLDEARTLATRANDTLADACQK HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH YPDRFIGMGTVAPQDPEWSAREIHRGARELGFKGIQINSHTQGRYLDEEFFDPIFRALVE HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHH VDQPLYIHPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVG CCCCEEEECCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEHH HMGEALPYWLYRLDYMHQAGVRSQRYERMKPLKKTIEGYLKSNVLVTNSGVAWEPAIKFC HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH QQVMGEDRVMYAMDYPYQYVADEVRAMDAMDMSAQTKKKFFQTNAEKWFKL HHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHCC >Mature Secondary Structure TQDLKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQSPSERAT CCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHH QILERLLDLGERRIADMDATGIDKAILALTSPGVQPLHDLDEARTLATRANDTLADACQK HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH YPDRFIGMGTVAPQDPEWSAREIHRGARELGFKGIQINSHTQGRYLDEEFFDPIFRALVE HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHH VDQPLYIHPATSPDSMIDPMLEAGLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVG CCCCEEEECCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEHH HMGEALPYWLYRLDYMHQAGVRSQRYERMKPLKKTIEGYLKSNVLVTNSGVAWEPAIKFC HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHH QQVMGEDRVMYAMDYPYQYVADEVRAMDAMDMSAQTKKKFFQTNAEKWFKL HHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA