Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
---|---|
Accession | NC_007794 |
Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87198807
Identifier: 87198807
GI number: 87198807
Start: 832996
End: 833913
Strand: Direct
Name: 87198807
Synonym: Saro_0785
Alternate gene names: NA
Gene position: 832996-833913 (Clockwise)
Preceding gene: 87198805
Following gene: 87198808
Centisome position: 23.39
GC content: 59.69
Gene sequence:
>918_bases GTGAGCAGCTTCAGGTACGGCGTGTCGCTGTACAGCTACACTGACGACTTCGGCACGGTGATGACGCTGGAAGATGCGTT CGATCACGTGGCCGATACAGGTTCGACCGGCATCGAGATCCTCGGCGAAACGAGCGTGCCGCTCTACCCCGAGCCGCCTG TCGCGTGGATTGACGACTGGTTCGCGAAGCTCGACCGCTACAAGCTTGAGCCAACCAACTTTGCCTGCTGGGTCGACACC CGCATCCAGTTGAACCGCAACATGAGCGTTGAGGAAGGCGCAGCCCAGATCGCGCAGGACTTGCGGCTGGGACACAAGCT GGGGTTCAAGTTCATCCGCCCGAAGTTCGGCGTGATCGACCATGACCTGACGCCAGACCCGATCTGGGAAGGCGCGGTCG AGCGCAATCTCGATCTGGCGCACAAGCTCGATCTGTTGATCTTGCCTGAAATCCACTCACCCACGCCGATCCGCCATCCG GTGACCGATGCCTATGTGCGGTTCATCGAGCGTACCGGCACGAAGAATTTCGGCCTGATGATCGACACCGGCATTTTCCA GGATCGCCCGATCGATCACTGGGGCGGCGGAATTACCGACGAAATCAAAAAAGGGGCATTGAGCTTCCTTGATGGCATAC ACACGCCGGTCGAGCATCTGGCCGACGTGATCCAGTACGTCCCGTTCATCCAGGCTAAGTTCCACAACATCGACGAGACC CTGCACGATCACCAGATCCCGTGGGAGAGGATCGTGCCGATGCTCAAGAAGCTCGGCTACGCGGGTTACCTTTCCAGCGA ATACGAAGGCAAGCGCGATCCCTGGGTGGCCATCGAGCAGGTGCGCCGTCAGCACGCGCTGATCCGCAAGCTCGAAGACG AATATGACGCAGCGAACGGGGGCTCGGGCAATGCTTGA
Upstream 100 bases:
>100_bases GCGTTCGCCTATTGCATACTTATTGATCGTTGATTAATAGCCGTCTAAATAATCGGTGATTAATAAGCCATTCCGGCGCA TCGTGATGGGAGAGGCAAGA
Downstream 100 bases:
>100_bases GCGCAGCCACATCCAGAGCACCGGCTTTCGAAATGTCGGCCCTGAGGGCGCACGCACGGGTTTCGAAGTCCGCATCCGTC AGGCCAACTACCGCTCCTCG
Product: xylose isomerase-like TIM barrel domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSSFRYGVSLYSYTDDFGTVMTLEDAFDHVADTGSTGIEILGETSVPLYPEPPVAWIDDWFAKLDRYKLEPTNFACWVDT RIQLNRNMSVEEGAAQIAQDLRLGHKLGFKFIRPKFGVIDHDLTPDPIWEGAVERNLDLAHKLDLLILPEIHSPTPIRHP VTDAYVRFIERTGTKNFGLMIDTGIFQDRPIDHWGGGITDEIKKGALSFLDGIHTPVEHLADVIQYVPFIQAKFHNIDET LHDHQIPWERIVPMLKKLGYAGYLSSEYEGKRDPWVAIEQVRRQHALIRKLEDEYDAANGGSGNA
Sequences:
>Translated_305_residues MSSFRYGVSLYSYTDDFGTVMTLEDAFDHVADTGSTGIEILGETSVPLYPEPPVAWIDDWFAKLDRYKLEPTNFACWVDT RIQLNRNMSVEEGAAQIAQDLRLGHKLGFKFIRPKFGVIDHDLTPDPIWEGAVERNLDLAHKLDLLILPEIHSPTPIRHP VTDAYVRFIERTGTKNFGLMIDTGIFQDRPIDHWGGGITDEIKKGALSFLDGIHTPVEHLADVIQYVPFIQAKFHNIDET LHDHQIPWERIVPMLKKLGYAGYLSSEYEGKRDPWVAIEQVRRQHALIRKLEDEYDAANGGSGNA >Mature_304_residues SSFRYGVSLYSYTDDFGTVMTLEDAFDHVADTGSTGIEILGETSVPLYPEPPVAWIDDWFAKLDRYKLEPTNFACWVDTR IQLNRNMSVEEGAAQIAQDLRLGHKLGFKFIRPKFGVIDHDLTPDPIWEGAVERNLDLAHKLDLLILPEIHSPTPIRHPV TDAYVRFIERTGTKNFGLMIDTGIFQDRPIDHWGGGITDEIKKGALSFLDGIHTPVEHLADVIQYVPFIQAKFHNIDETL HDHQIPWERIVPMLKKLGYAGYLSSEYEGKRDPWVAIEQVRRQHALIRKLEDEYDAANGGSGNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34641; Mature: 34509
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSFRYGVSLYSYTDDFGTVMTLEDAFDHVADTGSTGIEILGETSVPLYPEPPVAWIDDW CCCCCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH FAKLDRYKLEPTNFACWVDTRIQLNRNMSVEEGAAQIAQDLRLGHKLGFKFIRPKFGVID HHHHHCCCCCCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCC HDLTPDPIWEGAVERNLDLAHKLDLLILPEIHSPTPIRHPVTDAYVRFIERTGTKNFGLM CCCCCCCHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE IDTGIFQDRPIDHWGGGITDEIKKGALSFLDGIHTPVEHLADVIQYVPFIQAKFHNIDET EECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH LHDHQIPWERIVPMLKKLGYAGYLSSEYEGKRDPWVAIEQVRRQHALIRKLEDEYDAANG HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC GSGNA CCCCC >Mature Secondary Structure SSFRYGVSLYSYTDDFGTVMTLEDAFDHVADTGSTGIEILGETSVPLYPEPPVAWIDDW CCCCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH FAKLDRYKLEPTNFACWVDTRIQLNRNMSVEEGAAQIAQDLRLGHKLGFKFIRPKFGVID HHHHHCCCCCCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCC HDLTPDPIWEGAVERNLDLAHKLDLLILPEIHSPTPIRHPVTDAYVRFIERTGTKNFGLM CCCCCCCHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEE IDTGIFQDRPIDHWGGGITDEIKKGALSFLDGIHTPVEHLADVIQYVPFIQAKFHNIDET EECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH LHDHQIPWERIVPMLKKLGYAGYLSSEYEGKRDPWVAIEQVRRQHALIRKLEDEYDAANG HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC GSGNA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA