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The map label for this gene is ctrD [H]

Identifier: 87198772

GI number: 87198772

Start: 792865

End: 793563

Strand: Direct

Name: ctrD [H]

Synonym: Saro_0748

Alternate gene names: 87198772

Gene position: 792865-793563 (Clockwise)

Preceding gene: 87198771

Following gene: 87198773

Centisome position: 22.26

GC content: 62.23

Gene sequence:

>699_bases
ATGATCAGCGTGCGCGATCTCCGCAAGGTGTACACGACGCGGTTCGGCAAGAAGCTCGTGCTCGACGGCGTCAGCTTCGA
CCTGAACAAGGGAGAGCGCCTTGGCGTCCTCGGGCGAAACGGGGCAGGCAAGTCCACCATGGTCCGCCTGGTCAGCGGGG
CTGAGCGGCCGACCTCGGGTTCGATCGACCGGCGCATGTCGGTGTCGTGGCCGCTCGCCTTTGGCGGGGCGTTCCAGTAC
AACCTCACCGGGCTGGACAACATCCGTTTCATCAGCCGCATCTATGATCAGGATTTCGAGCGCAACCTCGCCTACGTCGA
GGAGTTCGCCGAGCTTGGTCCCTACATGCGCGAGCCGCTTAGGTCCTATTCTTCGGGAATGAAGGCGCGGTTGGCGTTCG
CGATCTCCATGATCATCGAGTTCGATTGCTTCCTGATCGATGAGATCGCCTCGGTTGGCGATGCCCGTTTTCACGACAAG
TGCAATCACGAGCTGTTCGAGCGGCGGGGCGACCGGGCGATGATCATCATCTCGCACGACGCGGCTTACGTCCGCGACCA
CTGCACGCGCTGGGGCGTGCTCCATGACGGGAGGCTCGAACTCTACGGCGATTTCGAGGTCGCATACGCCGACTTCAAGG
AACTCATCGGCTGGAAGCCCCCGCCGGGCTGGCCCTTTGTGGAACCGACAACTGCATGA

Upstream 100 bases:

>100_bases
GGGCGCATTACGACCTGGGCTATGTACTACCTCTCAGCCTCCTGCTGACCGGCCTTGCTCTGCTCGAGATCCGCAAGCTT
GCGGCGCGGGTGGTGCCCGA

Downstream 100 bases:

>100_bases
CCTTGCTGCCGCTGTATCCCTTTTGGCGTATTTTTGCCGGCGCTCGCGTAGCTCGCGGCGCTCCCTCGTTCGCGCGACCG
GTTTCGCAGGCCTGTACCCA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: Capsular-polysaccharide-transporting ATPase [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MISVRDLRKVYTTRFGKKLVLDGVSFDLNKGERLGVLGRNGAGKSTMVRLVSGAERPTSGSIDRRMSVSWPLAFGGAFQY
NLTGLDNIRFISRIYDQDFERNLAYVEEFAELGPYMREPLRSYSSGMKARLAFAISMIIEFDCFLIDEIASVGDARFHDK
CNHELFERRGDRAMIIISHDAAYVRDHCTRWGVLHDGRLELYGDFEVAYADFKELIGWKPPPGWPFVEPTTA

Sequences:

>Translated_232_residues
MISVRDLRKVYTTRFGKKLVLDGVSFDLNKGERLGVLGRNGAGKSTMVRLVSGAERPTSGSIDRRMSVSWPLAFGGAFQY
NLTGLDNIRFISRIYDQDFERNLAYVEEFAELGPYMREPLRSYSSGMKARLAFAISMIIEFDCFLIDEIASVGDARFHDK
CNHELFERRGDRAMIIISHDAAYVRDHCTRWGVLHDGRLELYGDFEVAYADFKELIGWKPPPGWPFVEPTTA
>Mature_232_residues
MISVRDLRKVYTTRFGKKLVLDGVSFDLNKGERLGVLGRNGAGKSTMVRLVSGAERPTSGSIDRRMSVSWPLAFGGAFQY
NLTGLDNIRFISRIYDQDFERNLAYVEEFAELGPYMREPLRSYSSGMKARLAFAISMIIEFDCFLIDEIASVGDARFHDK
CNHELFERRGDRAMIIISHDAAYVRDHCTRWGVLHDGRLELYGDFEVAYADFKELIGWKPPPGWPFVEPTTA

Specific function: Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI47078218, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI45446740, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=26.4423076923077, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI6005701, Length=217, Percent_Identity=26.2672811059908, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI27436953, Length=200, Percent_Identity=24, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1789751, Length=194, Percent_Identity=30.4123711340206, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367384, Length=233, Percent_Identity=27.8969957081545, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788761, Length=205, Percent_Identity=25.3658536585366, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082267, Length=212, Percent_Identity=27.3584905660377, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=27.3148148148148, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=27.2727272727273, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=224, Percent_Identity=25.8928571428571, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=217, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28573571, Length=217, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221500365, Length=181, Percent_Identity=29.8342541436464, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007184, Length=181, Percent_Identity=29.8342541436464, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: NA

EC number: =3.6.3.38 [H]

Molecular weight: Translated: 26407; Mature: 26407

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVRDLRKVYTTRFGKKLVLDGVSFDLNKGERLGVLGRNGAGKSTMVRLVSGAERPTSG
CCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
SIDRRMSVSWPLAFGGAFQYNLTGLDNIRFISRIYDQDFERNLAYVEEFAELGPYMREPL
CCCCEEEECCCEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RSYSSGMKARLAFAISMIIEFDCFLIDEIASVGDARFHDKCNHELFERRGDRAMIIISHD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCEEEEEEECC
AAYVRDHCTRWGVLHDGRLELYGDFEVAYADFKELIGWKPPPGWPFVEPTTA
HHHHHHHHHHCCCEECCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MISVRDLRKVYTTRFGKKLVLDGVSFDLNKGERLGVLGRNGAGKSTMVRLVSGAERPTSG
CCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
SIDRRMSVSWPLAFGGAFQYNLTGLDNIRFISRIYDQDFERNLAYVEEFAELGPYMREPL
CCCCEEEECCCEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RSYSSGMKARLAFAISMIIEFDCFLIDEIASVGDARFHDKCNHELFERRGDRAMIIISHD
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCEEEEEEECC
AAYVRDHCTRWGVLHDGRLELYGDFEVAYADFKELIGWKPPPGWPFVEPTTA
HHHHHHHHHHCCCEECCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]