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The map label for this gene is rnpA [H]

Identifier: 87198600

GI number: 87198600

Start: 623374

End: 623862

Strand: Direct

Name: rnpA [H]

Synonym: Saro_0576

Alternate gene names: 87198600

Gene position: 623374-623862 (Clockwise)

Preceding gene: 87198599

Following gene: 87198601

Centisome position: 17.5

GC content: 68.3

Gene sequence:

>489_bases
GTGACCCGAATCGCCACCATCCGGAAACGGGCGGACTTCGTTGCCGCCAACCGCGGGATCCGGGTCGCAAGGCCCGGATT
CGTGCTGTTGGTGAACCGCGTCGCGAAGCCGGGCGATGATGCGTCCGTTGCTGATGCCGAGATGCGATTCGGCGTCACCG
TCACCAAGAAGATCGGCAATGCGGTCGTCCGCAACCGAATGAAACGCCGTTTCCGCGCGCTCCTGCGCGAGGCGTTGCCG
ACCGGTGGCATCCCCGGCGCGGACCACGTGATGATCGGCCGCGAAGGCGGCGTCGAGCGCGACTTTGCGCTGCTGCGCGA
GGAACTTGCCGTTGCGCTTTCCCGCGCCGCTGCCGGCAAGGGCGATCCGCCGCGCAAGCGTTCCGGCCCCCGCGTCCATC
ACGGACGCGGCAAAGGCGAAGGTCAGGGCCAAGGTCAGGGCCAGCGTCAGGACCAAGGCCAGAGCCAGGGTCCGGGGCCG
AACAAGTGA

Upstream 100 bases:

>100_bases
CGTTGGCGGCCGCAAGGTGCTGGCCGCTCGCCGCGCGCGTGGCCGCAAGAAGCTGTCGGCCTGAAGCTGACAGCATAAAT
CCGGCAGGGGCTGGCGCGGG

Downstream 100 bases:

>100_bases
AGCGCCTCCTCATCCTCATCGCCCGGGCTTGGCAACTCGGGCCTTCGCGGGTGCTCCCGCCCTCGTGCCGCTACAGCCCT
TCCTGCTCGCAATATGCGAT

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTRIATIRKRADFVAANRGIRVARPGFVLLVNRVAKPGDDASVADAEMRFGVTVTKKIGNAVVRNRMKRRFRALLREALP
TGGIPGADHVMIGREGGVERDFALLREELAVALSRAAAGKGDPPRKRSGPRVHHGRGKGEGQGQGQGQRQDQGQSQGPGP
NK

Sequences:

>Translated_162_residues
MTRIATIRKRADFVAANRGIRVARPGFVLLVNRVAKPGDDASVADAEMRFGVTVTKKIGNAVVRNRMKRRFRALLREALP
TGGIPGADHVMIGREGGVERDFALLREELAVALSRAAAGKGDPPRKRSGPRVHHGRGKGEGQGQGQGQRQDQGQSQGPGP
NK
>Mature_161_residues
TRIATIRKRADFVAANRGIRVARPGFVLLVNRVAKPGDDASVADAEMRFGVTVTKKIGNAVVRNRMKRRFRALLREALPT
GGIPGADHVMIGREGGVERDFALLREELAVALSRAAAGKGDPPRKRSGPRVHHGRGKGEGQGQGQGQRQDQGQSQGPGPN
K

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 17389; Mature: 17258

Theoretical pI: Translated: 12.17; Mature: 12.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIATIRKRADFVAANRGIRVARPGFVLLVNRVAKPGDDASVADAEMRFGVTVTKKIGN
CCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHH
AVVRNRMKRRFRALLREALPTGGIPGADHVMIGREGGVERDFALLREELAVALSRAAAGK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
GDPPRKRSGPRVHHGRGKGEGQGQGQGQRQDQGQSQGPGPNK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRIATIRKRADFVAANRGIRVARPGFVLLVNRVAKPGDDASVADAEMRFGVTVTKKIGN
CCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHHH
AVVRNRMKRRFRALLREALPTGGIPGADHVMIGREGGVERDFALLREELAVALSRAAAGK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
GDPPRKRSGPRVHHGRGKGEGQGQGQGQRQDQGQSQGPGPNK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA