Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is ispG
Identifier: 87198442
GI number: 87198442
Start: 455622
End: 456746
Strand: Direct
Name: ispG
Synonym: Saro_0417
Alternate gene names: 87198442
Gene position: 455622-456746 (Clockwise)
Preceding gene: 87198441
Following gene: 87198444
Centisome position: 12.79
GC content: 66.04
Gene sequence:
>1125_bases ATGTCATCGGTACGTCCCTGGCGCGATATCGCGCGTCGCAAGAGCCGCCAGATCATGGTCGGCACGGTCCCCGTCGGCGG CGATGCCCCGATCACCGTGCAGACCATGACCAACACCCCGACGTCCGACGCCGTCGCCACGATCGACCAGATCCGTCGCT GCGAGGAAGCGGGCGCCGATCTTATCCGCGTGTCCTGTCCCGACGTGGAAAGCACAGCGGCCTTCCGCCAGATCGCCCGG GCCGCCCGGGTTCCGCTGATCGCGGACATCCACTTCCACTACAAGCGCGCGCTCGAAGCGGCCGATGCGGGGGCCGCGTG CCTGCGCATCAATCCGGGCAACATCGGCAGCAGCGACCGCGTGGCCGAAGTGGTCCGCGCCGCCAAGGCCAACGGCTGCG CGATCCGCATCGGCGTCAACGCTGGCAGCCTCGAGAAAGACCTGCTCGAAAAGTACGGCGAGCCCTGTCCCGAAGCGCTC GTCGAATCCGCGCTCGACCATATCAAGCTGCTGCAGGACCACGATTTCCACGAATACAAGGTGGCGGTTAAGGCCTCCGA CGTGTTCCTCGCCGTCGCCGCCTACATGGGCCTTGCAGAAGCGGTCGATTGCCCGCTGCATCTTGGCATTACCGAGGCAG GCGGGCTGATCGGCGGGACGGTGAAATCGTCCGTCGGCATCGGCAACCTGCTCTGGGCCGGCATCGGCGACACCTTGCGC GTCTCGCTTTCGGCCGAACCGGAAGAGGAAGTGCGCGTCGGGTTCGAGATCCTCAAGACGCTGGGCCTGCGCACGCGCGG CGTCCGCGTCGTGTCGTGTCCGTCCTGCGCTCGGCAGGGTTTCGACGTGATCCGGACCGTGGAGGCGCTGGAAAAGCGGC TGACGCACATCAAGACGCCGATCTCGCTTTCCGTACTGGGCTGCGTCGTCAATGGACCGGGCGAAGCCCGCGAGACCGAT ATCGGCCTCACCGGCGGCGGCAACGGCAAGCACATGGTCTATCTTTCGGGCGTGACCGACCACCACGTCCAGTCGGAGGA CATGCTAGACCACATCGTCTCGCTGGTCGAACAGAAGGCTGCGGAAATGGAAGCCGCTGCCGCAGAAGCGGAAGCGGCAG CCTGA
Upstream 100 bases:
>100_bases CCCCGCCGAGGCCCGCAACCCCGGTCCCATGTGCAGGTAGGTGCTTTCAGGTGCCTTTAGGTGCCTTTCAGGTCGCTGCG TAAATCCCTATAGAGGCCCC
Downstream 100 bases:
>100_bases ATCAGGTCCCGGTTGCGAGCGCCAGGGACAGGACCACGGCGTTCGAGGCGACGTGGGTGAGGATCGCGGCCACCAGGCCG ATCCTGACGCGGATGTAGCC
Product: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Products: NA
Alternate protein names: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [H]
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MSSVRPWRDIARRKSRQIMVGTVPVGGDAPITVQTMTNTPTSDAVATIDQIRRCEEAGADLIRVSCPDVESTAAFRQIAR AARVPLIADIHFHYKRALEAADAGAACLRINPGNIGSSDRVAEVVRAAKANGCAIRIGVNAGSLEKDLLEKYGEPCPEAL VESALDHIKLLQDHDFHEYKVAVKASDVFLAVAAYMGLAEAVDCPLHLGITEAGGLIGGTVKSSVGIGNLLWAGIGDTLR VSLSAEPEEEVRVGFEILKTLGLRTRGVRVVSCPSCARQGFDVIRTVEALEKRLTHIKTPISLSVLGCVVNGPGEARETD IGLTGGGNGKHMVYLSGVTDHHVQSEDMLDHIVSLVEQKAAEMEAAAAEAEAAA
Sequences:
>Translated_374_residues MSSVRPWRDIARRKSRQIMVGTVPVGGDAPITVQTMTNTPTSDAVATIDQIRRCEEAGADLIRVSCPDVESTAAFRQIAR AARVPLIADIHFHYKRALEAADAGAACLRINPGNIGSSDRVAEVVRAAKANGCAIRIGVNAGSLEKDLLEKYGEPCPEAL VESALDHIKLLQDHDFHEYKVAVKASDVFLAVAAYMGLAEAVDCPLHLGITEAGGLIGGTVKSSVGIGNLLWAGIGDTLR VSLSAEPEEEVRVGFEILKTLGLRTRGVRVVSCPSCARQGFDVIRTVEALEKRLTHIKTPISLSVLGCVVNGPGEARETD IGLTGGGNGKHMVYLSGVTDHHVQSEDMLDHIVSLVEQKAAEMEAAAAEAEAAA >Mature_373_residues SSVRPWRDIARRKSRQIMVGTVPVGGDAPITVQTMTNTPTSDAVATIDQIRRCEEAGADLIRVSCPDVESTAAFRQIARA ARVPLIADIHFHYKRALEAADAGAACLRINPGNIGSSDRVAEVVRAAKANGCAIRIGVNAGSLEKDLLEKYGEPCPEALV ESALDHIKLLQDHDFHEYKVAVKASDVFLAVAAYMGLAEAVDCPLHLGITEAGGLIGGTVKSSVGIGNLLWAGIGDTLRV SLSAEPEEEVRVGFEILKTLGLRTRGVRVVSCPSCARQGFDVIRTVEALEKRLTHIKTPISLSVLGCVVNGPGEARETDI GLTGGGNGKHMVYLSGVTDHHVQSEDMLDHIVSLVEQKAAEMEAAAAEAEAAA
Specific function: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate [H]
COG id: COG0821
COG function: function code I; Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispG family [H]
Homologues:
Organism=Escherichia coli, GI1788863, Length=357, Percent_Identity=55.1820728291317, Blast_Score=404, Evalue=1e-114,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR016425 - InterPro: IPR004588 - InterPro: IPR011060 [H]
Pfam domain/function: PF04551 GcpE [H]
EC number: =1.17.7.1 [H]
Molecular weight: Translated: 39625; Mature: 39494
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVRPWRDIARRKSRQIMVGTVPVGGDAPITVQTMTNTPTSDAVATIDQIRRCEEAGAD CCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC LIRVSCPDVESTAAFRQIARAARVPLIADIHFHYKRALEAADAGAACLRINPGNIGSSDR EEEEECCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH VAEVVRAAKANGCAIRIGVNAGSLEKDLLEKYGEPCPEALVESALDHIKLLQDHDFHEYK HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEE VAVKASDVFLAVAAYMGLAEAVDCPLHLGITEAGGLIGGTVKSSVGIGNLLWAGIGDTLR EEEEHHHHHHHHHHHHHHHHHHCCCEEECEECCCCCCCCHHHHCCCCCHHHHHCCCCEEE VSLSAEPEEEVRVGFEILKTLGLRTRGVRVVSCPSCARQGFDVIRTVEALEKRLTHIKTP EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC ISLSVLGCVVNGPGEARETDIGLTGGGNGKHMVYLSGVTDHHVQSEDMLDHIVSLVEQKA CEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH AEMEAAAAEAEAAA HHHHHHHHHHHCCC >Mature Secondary Structure SSVRPWRDIARRKSRQIMVGTVPVGGDAPITVQTMTNTPTSDAVATIDQIRRCEEAGAD CCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC LIRVSCPDVESTAAFRQIARAARVPLIADIHFHYKRALEAADAGAACLRINPGNIGSSDR EEEEECCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH VAEVVRAAKANGCAIRIGVNAGSLEKDLLEKYGEPCPEALVESALDHIKLLQDHDFHEYK HHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEE VAVKASDVFLAVAAYMGLAEAVDCPLHLGITEAGGLIGGTVKSSVGIGNLLWAGIGDTLR EEEEHHHHHHHHHHHHHHHHHHCCCEEECEECCCCCCCCHHHHCCCCCHHHHHCCCCEEE VSLSAEPEEEVRVGFEILKTLGLRTRGVRVVSCPSCARQGFDVIRTVEALEKRLTHIKTP EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC ISLSVLGCVVNGPGEARETDIGLTGGGNGKHMVYLSGVTDHHVQSEDMLDHIVSLVEQKA CEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH AEMEAAAAEAEAAA HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA