Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198408
Identifier: 87198408
GI number: 87198408
Start: 420278
End: 421420
Strand: Direct
Name: 87198408
Synonym: Saro_0383
Alternate gene names: NA
Gene position: 420278-421420 (Clockwise)
Preceding gene: 87198399
Following gene: 87198409
Centisome position: 11.8
GC content: 66.05
Gene sequence:
>1143_bases ATGATGCGGTCTGCACTTGCCCTCGCACTTGCGGTTGTCACGACTGCTCCCGCCCTTCTGCCTGCTTCCGCACGGGCACA GGCCCGGCCGCCGCTTCCCGCCGCGGTGCTCACGCACATGAATGGACTCGACGCGCGCTGCACTGCGGCTGGCGGCAAGC CTGGCAGCGGGCACTACGTGATCGCTCAGGATTTCACCGGCGACGGCTTGCTCGATTACCTCCTGTCCGAAGGCGATTAC GATTGCACTGGACGGCCTGGGCTGTTCCGAGCGGAGGGGCAAGCCCGGGTCGATATTTTTGTCACTGACCGGGCGGGCGC TGCTCGGCGGATCTATTCCGACAGGCTGATCGCCTACCGGGTACTGGCCGGACGTCCTGCCAGAGTGCAGATCGCACGCA AGGGTGCGCTCTGCGGCGCCGGGACGCCGCCGCAGAGCCAGTGCGCAGCTCAACTCGCCTGGAATGGCACCTCCTTTGGC GAGGCGGCATCGGTATCGCGCGGGGGCAGCGGCGCCTCGTCCGGTCCTGTTGCAATGCCTGAGGCCGCGCCGGGACCAAC GTCCGAAGCGGGCTTCCTTGTCAGTTGCCGGGCGGACCTGATCCGCCGCGATGCCAGTGCTGCCCGCTGGGCCGATGATG AATGCCGGACCAACTGGCAGAAGATCTTGGCGAGTGGCCCGGCTGCCAATATGCTGCTCGCGGTTCTGCCAGCCACGGCA AGCGGCAAGCCCACCCTGGCAGAGACAAAACAACGGGCCGCTGCAGTCCGCTGGGCAACCCGGGCCAACCCGCCCGCCTT GGCGACAGGAACGCTGGGACAGCTAAGCGCAGCGATCGAGGGACGCGGATCGCCGGCAACAGTCTCGGTGAACTGGGCGA AGGTAGGCGCGGAAATCCCTTACGACATTGTCGGGGCGCTGCGCGTGCGCGGCCTCGCCATTACGGAAATGGCCTGCGAG AAGGTTGGCGTAGGGGCAGGAACGCGCACTTATGCCGGGACATCGGCAGAACGTGTGCCGTTCACGCTAACCATCGATCA ACAGACCGCGCCCCTTGGGCACATGCAAAGCTATTACACTGCTACCATCAGCCTGGAGGCACGGCATCCGCCGCGCGGAT CAACGACCGGCTGCGATTTCTGA
Upstream 100 bases:
>100_bases GGCGGAGAGACAGTCAATACCCGTCCGCTCCCGGTTGCGTAGCGCAAGGTCGAGCTAGTAGCAGCTTGTGCAATCCCCAG CACTGTCGCATCCTCCGCAG
Downstream 100 bases:
>100_bases TCCTTGCCCTGTTCCGCGAAACCCGGCCTGCCGGACGTCTTGACGAGGATCCTCGAATGTTAACCGTATGCTAAGGCTCG AAGCGACGTGATCGATCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MMRSALALALAVVTTAPALLPASARAQARPPLPAAVLTHMNGLDARCTAAGGKPGSGHYVIAQDFTGDGLLDYLLSEGDY DCTGRPGLFRAEGQARVDIFVTDRAGAARRIYSDRLIAYRVLAGRPARVQIARKGALCGAGTPPQSQCAAQLAWNGTSFG EAASVSRGGSGASSGPVAMPEAAPGPTSEAGFLVSCRADLIRRDASAARWADDECRTNWQKILASGPAANMLLAVLPATA SGKPTLAETKQRAAAVRWATRANPPALATGTLGQLSAAIEGRGSPATVSVNWAKVGAEIPYDIVGALRVRGLAITEMACE KVGVGAGTRTYAGTSAERVPFTLTIDQQTAPLGHMQSYYTATISLEARHPPRGSTTGCDF
Sequences:
>Translated_380_residues MMRSALALALAVVTTAPALLPASARAQARPPLPAAVLTHMNGLDARCTAAGGKPGSGHYVIAQDFTGDGLLDYLLSEGDY DCTGRPGLFRAEGQARVDIFVTDRAGAARRIYSDRLIAYRVLAGRPARVQIARKGALCGAGTPPQSQCAAQLAWNGTSFG EAASVSRGGSGASSGPVAMPEAAPGPTSEAGFLVSCRADLIRRDASAARWADDECRTNWQKILASGPAANMLLAVLPATA SGKPTLAETKQRAAAVRWATRANPPALATGTLGQLSAAIEGRGSPATVSVNWAKVGAEIPYDIVGALRVRGLAITEMACE KVGVGAGTRTYAGTSAERVPFTLTIDQQTAPLGHMQSYYTATISLEARHPPRGSTTGCDF >Mature_380_residues MMRSALALALAVVTTAPALLPASARAQARPPLPAAVLTHMNGLDARCTAAGGKPGSGHYVIAQDFTGDGLLDYLLSEGDY DCTGRPGLFRAEGQARVDIFVTDRAGAARRIYSDRLIAYRVLAGRPARVQIARKGALCGAGTPPQSQCAAQLAWNGTSFG EAASVSRGGSGASSGPVAMPEAAPGPTSEAGFLVSCRADLIRRDASAARWADDECRTNWQKILASGPAANMLLAVLPATA SGKPTLAETKQRAAAVRWATRANPPALATGTLGQLSAAIEGRGSPATVSVNWAKVGAEIPYDIVGALRVRGLAITEMACE KVGVGAGTRTYAGTSAERVPFTLTIDQQTAPLGHMQSYYTATISLEARHPPRGSTTGCDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39231; Mature: 39231
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRSALALALAVVTTAPALLPASARAQARPPLPAAVLTHMNGLDARCTAAGGKPGSGHYV CCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCEE IAQDFTGDGLLDYLLSEGDYDCTGRPGLFRAEGQARVDIFVTDRAGAARRIYSDRLIAYR EEECCCCCHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHEEEEH VLAGRPARVQIARKGALCGAGTPPQSQCAAQLAWNGTSFGEAASVSRGGSGASSGPVAMP HHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCEECC EAAPGPTSEAGFLVSCRADLIRRDASAARWADDECRTNWQKILASGPAANMLLAVLPATA CCCCCCCCCCCEEEEEHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHHHEEEEEECCCC SGKPTLAETKQRAAAVRWATRANPPALATGTLGQLSAAIEGRGSPATVSVNWAKVGAEIP CCCCCHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCCCCEEEEEEHHCCCCCCC YDIVGALRVRGLAITEMACEKVGVGAGTRTYAGTSAERVPFTLTIDQQTAPLGHMQSYYT HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCEEE ATISLEARHPPRGSTTGCDF EEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MMRSALALALAVVTTAPALLPASARAQARPPLPAAVLTHMNGLDARCTAAGGKPGSGHYV CCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCEE IAQDFTGDGLLDYLLSEGDYDCTGRPGLFRAEGQARVDIFVTDRAGAARRIYSDRLIAYR EEECCCCCHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHEEEEH VLAGRPARVQIARKGALCGAGTPPQSQCAAQLAWNGTSFGEAASVSRGGSGASSGPVAMP HHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCEECC EAAPGPTSEAGFLVSCRADLIRRDASAARWADDECRTNWQKILASGPAANMLLAVLPATA CCCCCCCCCCCEEEEEHHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCHHHEEEEEECCCC SGKPTLAETKQRAAAVRWATRANPPALATGTLGQLSAAIEGRGSPATVSVNWAKVGAEIP CCCCCHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCCCCEEEEEEHHCCCCCCC YDIVGALRVRGLAITEMACEKVGVGAGTRTYAGTSAERVPFTLTIDQQTAPLGHMQSYYT HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCEEE ATISLEARHPPRGSTTGCDF EEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA