Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198375
Identifier: 87198375
GI number: 87198375
Start: 376858
End: 378921
Strand: Direct
Name: 87198375
Synonym: Saro_0350
Alternate gene names: NA
Gene position: 376858-378921 (Clockwise)
Preceding gene: 87198374
Following gene: 87198376
Centisome position: 10.58
GC content: 64.73
Gene sequence:
>2064_bases ATGCTTGCCGAGATGGCCTATTCGCGGGCCGACGAAGCAGCGGGTGCGTCTAACCCGAGTGCAATTGATCTCAGCGGATC GTTCTACGCCAATCTTTCCGCATGCCGTGCAGCTGCCCGGGCCTATTTCCGCTTCTGCAATTCTGAGGCTCGTCCACAGG GCAGGTTTGGCGAGCTCGACCGGGAGGCAGTTCTCGAGGCGGTGGCCGCATGTGACGCCGTTGGCGACGTCGCCCAGTAT GTCGCTGATCTCGATCTCGGGCAGCCGACCAGATACTGGCTCGTTCTGGACGGCAAGCGCTACCCCAGCAAAGCCGTCGT ACGCGATGCTTTGGCGAGACGCGGCAGTGACTGGCTGCCTGGCGGCGGTGAATGCAAGACCGCGCTCGAGCGCCTCGGCT TTGTCGTCATCGACTGGCCCGAACTCAACCGCGCTCGCGATGCATTCCTGCGCCAGATGCCGGATTTCAGCGATTTCCGT GCCGCTGCCGGCGCCTACTGGGATGTGGAACGCGCCTACAAGAACGGACTGATCGAGCAGGCCAAGGCAATCATTGCACG GCAGGATGACGACCGCGCGGTTGGCGAAAGCCTCTACCGGCTGCTTTCGGTGGGCGGTTCGGGCCTGCCGCTGAGCTGGC GGACACTGTCCGAAGTCCAGAACGCCGATCCCGAGCTGCGCGACCGTTTCTACACCTCGCTGGGGGTGCTTGCTCGCAGC GATGGCCCGCTCGAAGAAGCTGTCCCGGCCGCGGCGCGCGAGCTCGAAGCCCTGCGTGAAGCGGGCATTGCAGGGCTGCG CCGGGGCGAGGTGCTCTCCATTCCGATTACCGTCTGGGCCACTTTGCACCCCGACCAGGCGAGTTGGTTCAAGATCGCCA AGATCGACGAGATGGGGCGGCGGTTGTTCGGTCGCAGGCTGTTCCCGCAAACCGAGTTCCGCGACGCTGATCTTGCCGAA TGGCTGCAGTTGATGCGGGCGCTGCTCGGGTTGCTCGATAAGGAATTCGGGTGGCACCCGCATGACCTGTTCGATGTGCA GGGGTTCATCTGGGTGGTCGGCAATCCGGATTCCCCCCGCGAACTCGATCCGGTGCCCGTCTGGATGGTGACCTCGCTGT GGGGGCAAGAGGACGGCTTGCCGCGCTTCGTCGAGCGGGCAGAGTGGAGTTTGCTCACTGACACCGGCAGCGCGAACAAC CGCCGCGTCCGCGAGATGCAGGTCGGTGACCGGATCTTCCTCAAGGATTTCGTGCCGCGCGCCCGCGATCTGCCCTTCGA TGCCGGAACGGGGATCATGGCGGCGGCGACCGTGTTCCTGGCCCGTCACACCCGCTCGCTCGCCACCCGGCGCACGCTTG ACGAGTTGAGACATGCTCTGGCCGATATCCCGCTGATGCCAATCACGCGGCTGCCGTGGCAAGCGGTGCGGATTGATCGC ACCAACCGGCGCTGGGAGGCGCTGTTCCGGCTCGCCCGCCTGCTGCTTCAGCGCGACTGGCAGGCTACTCACCATCACGC CAAGGCCCCTGATGGTCTGACCCTGCTTTTTCCAATGAACGACCTGTTCGAGAAATACATCGCTGTGCTGCTTCGCCGGG CGCTGGCGGGGAGCGGGATCGAGGTGATCGACCAGGGCGGCCACCGCGCCTGCCTTGGCTCCTTTACTGGCGGGCATCTC GAGACCGGCGAGGTGTTCCGCACCAAACCTGACATCATGTTGCGCCGTGGTCGCGAAATTGTGGCCATCATCGATACCAA GTGGAAGAAGCTCAGCCTCGACCCGCTCGACCGCAAGCACGGGGTTAGCCAGGCTGATGTCTATCAGCTCATGGCCTATG CGCGGCTCTACCAGACGGCCGAGCTGATGCTACTTTACCCGGCGCGACCGGGGCAGGTGTGCGCAGAGCGCGCACAGTTC GGCATGGCGGGCGGGAGCGAGCGCCTCAGAATCGCGATGGCTGACGTCTCGCTGGACGAGAAGGCTCTGGCAGAGGCTCT CGGAGTGCTGGTGATGGCGCCCGCCGTCACCAAGGCTTCGCCATTGCCGCAGGCGGTGGGGTAG
Upstream 100 bases:
>100_bases TTATGCGCCGACATCCATTGCCACGTGGCTCTCGGACGGACGCAAGGTTGACGGCGCTTATGGTCTAGATGAGCACTTTG ATCGGGACGGCGGTGCTTCG
Downstream 100 bases:
>100_bases CGAAGCGCGATGGCACGTAACGCGAAGCTCGACCGGCTGCTGACGCTGGTCAAGGCGCTGGGAGAAAGCGCAGAAGGCTT GACCCTCGACGAGATGGCAG
Product: McrBC 5-methylcytosine restriction system component-like
Products: NA
Alternate protein names: McrBC Restriction Endonuclease System Subunit McrC; McrBC 5-Methylcytosine Restriction System Component-Like
Number of amino acids: Translated: 687; Mature: 687
Protein sequence:
>687_residues MLAEMAYSRADEAAGASNPSAIDLSGSFYANLSACRAAARAYFRFCNSEARPQGRFGELDREAVLEAVAACDAVGDVAQY VADLDLGQPTRYWLVLDGKRYPSKAVVRDALARRGSDWLPGGGECKTALERLGFVVIDWPELNRARDAFLRQMPDFSDFR AAAGAYWDVERAYKNGLIEQAKAIIARQDDDRAVGESLYRLLSVGGSGLPLSWRTLSEVQNADPELRDRFYTSLGVLARS DGPLEEAVPAAARELEALREAGIAGLRRGEVLSIPITVWATLHPDQASWFKIAKIDEMGRRLFGRRLFPQTEFRDADLAE WLQLMRALLGLLDKEFGWHPHDLFDVQGFIWVVGNPDSPRELDPVPVWMVTSLWGQEDGLPRFVERAEWSLLTDTGSANN RRVREMQVGDRIFLKDFVPRARDLPFDAGTGIMAAATVFLARHTRSLATRRTLDELRHALADIPLMPITRLPWQAVRIDR TNRRWEALFRLARLLLQRDWQATHHHAKAPDGLTLLFPMNDLFEKYIAVLLRRALAGSGIEVIDQGGHRACLGSFTGGHL ETGEVFRTKPDIMLRRGREIVAIIDTKWKKLSLDPLDRKHGVSQADVYQLMAYARLYQTAELMLLYPARPGQVCAERAQF GMAGGSERLRIAMADVSLDEKALAEALGVLVMAPAVTKASPLPQAVG
Sequences:
>Translated_687_residues MLAEMAYSRADEAAGASNPSAIDLSGSFYANLSACRAAARAYFRFCNSEARPQGRFGELDREAVLEAVAACDAVGDVAQY VADLDLGQPTRYWLVLDGKRYPSKAVVRDALARRGSDWLPGGGECKTALERLGFVVIDWPELNRARDAFLRQMPDFSDFR AAAGAYWDVERAYKNGLIEQAKAIIARQDDDRAVGESLYRLLSVGGSGLPLSWRTLSEVQNADPELRDRFYTSLGVLARS DGPLEEAVPAAARELEALREAGIAGLRRGEVLSIPITVWATLHPDQASWFKIAKIDEMGRRLFGRRLFPQTEFRDADLAE WLQLMRALLGLLDKEFGWHPHDLFDVQGFIWVVGNPDSPRELDPVPVWMVTSLWGQEDGLPRFVERAEWSLLTDTGSANN RRVREMQVGDRIFLKDFVPRARDLPFDAGTGIMAAATVFLARHTRSLATRRTLDELRHALADIPLMPITRLPWQAVRIDR TNRRWEALFRLARLLLQRDWQATHHHAKAPDGLTLLFPMNDLFEKYIAVLLRRALAGSGIEVIDQGGHRACLGSFTGGHL ETGEVFRTKPDIMLRRGREIVAIIDTKWKKLSLDPLDRKHGVSQADVYQLMAYARLYQTAELMLLYPARPGQVCAERAQF GMAGGSERLRIAMADVSLDEKALAEALGVLVMAPAVTKASPLPQAVG >Mature_687_residues MLAEMAYSRADEAAGASNPSAIDLSGSFYANLSACRAAARAYFRFCNSEARPQGRFGELDREAVLEAVAACDAVGDVAQY VADLDLGQPTRYWLVLDGKRYPSKAVVRDALARRGSDWLPGGGECKTALERLGFVVIDWPELNRARDAFLRQMPDFSDFR AAAGAYWDVERAYKNGLIEQAKAIIARQDDDRAVGESLYRLLSVGGSGLPLSWRTLSEVQNADPELRDRFYTSLGVLARS DGPLEEAVPAAARELEALREAGIAGLRRGEVLSIPITVWATLHPDQASWFKIAKIDEMGRRLFGRRLFPQTEFRDADLAE WLQLMRALLGLLDKEFGWHPHDLFDVQGFIWVVGNPDSPRELDPVPVWMVTSLWGQEDGLPRFVERAEWSLLTDTGSANN RRVREMQVGDRIFLKDFVPRARDLPFDAGTGIMAAATVFLARHTRSLATRRTLDELRHALADIPLMPITRLPWQAVRIDR TNRRWEALFRLARLLLQRDWQATHHHAKAPDGLTLLFPMNDLFEKYIAVLLRRALAGSGIEVIDQGGHRACLGSFTGGHL ETGEVFRTKPDIMLRRGREIVAIIDTKWKKLSLDPLDRKHGVSQADVYQLMAYARLYQTAELMLLYPARPGQVCAERAQF GMAGGSERLRIAMADVSLDEKALAEALGVLVMAPAVTKASPLPQAVG
Specific function: Unknown
COG id: COG4268
COG function: function code V; McrBC 5-methylcytosine restriction system component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76601; Mature: 76601
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAEMAYSRADEAAGASNPSAIDLSGSFYANLSACRAAARAYFRFCNSEARPQGRFGELD CCCHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC REAVLEAVAACDAVGDVAQYVADLDLGQPTRYWLVLDGKRYPSKAVVRDALARRGSDWLP HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC GGGECKTALERLGFVVIDWPELNRARDAFLRQMPDFSDFRAAAGAYWDVERAYKNGLIEQ CCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCHHHH AKAIIARQDDDRAVGESLYRLLSVGGSGLPLSWRTLSEVQNADPELRDRFYTSLGVLARS HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC DGPLEEAVPAAARELEALREAGIAGLRRGEVLSIPITVWATLHPDQASWFKIAKIDEMGR CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCEEHHHHHHHHH RLFGRRLFPQTEFRDADLAEWLQLMRALLGLLDKEFGWHPHDLFDVQGFIWVVGNPDSPR HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEEECCCCCC ELDPVPVWMVTSLWGQEDGLPRFVERAEWSLLTDTGSANNRRVREMQVGDRIFLKDFVPR CCCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEECCCCCCCCEEHHHHCCCCHHHHHHCCH ARDLPFDAGTGIMAAATVFLARHTRSLATRRTLDELRHALADIPLMPITRLPWQAVRIDR HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC TNRRWEALFRLARLLLQRDWQATHHHAKAPDGLTLLFPMNDLFEKYIAVLLRRALAGSGI CCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCC EVIDQGGHRACLGSFTGGHLETGEVFRTKPDIMLRRGREIVAIIDTKWKKLSLDPLDRKH CEEECCCCEEEECCCCCCCCCCCCHHCCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHC GVSQADVYQLMAYARLYQTAELMLLYPARPGQVCAERAQFGMAGGSERLRIAMADVSLDE CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCH KALAEALGVLVMAPAVTKASPLPQAVG HHHHHHHHHHHHCCCHHCCCCCCCCCC >Mature Secondary Structure MLAEMAYSRADEAAGASNPSAIDLSGSFYANLSACRAAARAYFRFCNSEARPQGRFGELD CCCHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC REAVLEAVAACDAVGDVAQYVADLDLGQPTRYWLVLDGKRYPSKAVVRDALARRGSDWLP HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC GGGECKTALERLGFVVIDWPELNRARDAFLRQMPDFSDFRAAAGAYWDVERAYKNGLIEQ CCCHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCHHHH AKAIIARQDDDRAVGESLYRLLSVGGSGLPLSWRTLSEVQNADPELRDRFYTSLGVLARS HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC DGPLEEAVPAAARELEALREAGIAGLRRGEVLSIPITVWATLHPDQASWFKIAKIDEMGR CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCEEHHHHHHHHH RLFGRRLFPQTEFRDADLAEWLQLMRALLGLLDKEFGWHPHDLFDVQGFIWVVGNPDSPR HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEEECCCCCC ELDPVPVWMVTSLWGQEDGLPRFVERAEWSLLTDTGSANNRRVREMQVGDRIFLKDFVPR CCCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEECCCCCCCCEEHHHHCCCCHHHHHHCCH ARDLPFDAGTGIMAAATVFLARHTRSLATRRTLDELRHALADIPLMPITRLPWQAVRIDR HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC TNRRWEALFRLARLLLQRDWQATHHHAKAPDGLTLLFPMNDLFEKYIAVLLRRALAGSGI CCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCC EVIDQGGHRACLGSFTGGHLETGEVFRTKPDIMLRRGREIVAIIDTKWKKLSLDPLDRKH CEEECCCCEEEECCCCCCCCCCCCHHCCCCHHHHHCCCEEEEEEECCCCCCCCCCCHHHC GVSQADVYQLMAYARLYQTAELMLLYPARPGQVCAERAQFGMAGGSERLRIAMADVSLDE CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCH KALAEALGVLVMAPAVTKASPLPQAVG HHHHHHHHHHHHCCCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA