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The map label for this gene is ybbN [H]

Identifier: 87198291

GI number: 87198291

Start: 284887

End: 285792

Strand: Direct

Name: ybbN [H]

Synonym: Saro_0266

Alternate gene names: 87198291

Gene position: 284887-285792 (Clockwise)

Preceding gene: 87198290

Following gene: 87198292

Centisome position: 8.0

GC content: 68.21

Gene sequence:

>906_bases
TTGGCCAGCATGGGGCTCAATCTCGAGGAACAGAAAGCCGTCGACCGCTTCCGCTCTGCGGTGGTCGAACCGTCGATGAC
CAAGCTGGTCATCCTCGACTTCTGGGCGGAGTGGTGCGGACCGTGCAAGGCGCTTACCCCGGTGCTTGAAAAGGTCGCCG
CCGAATATGCCGACAAGGGCGTGGTCCTTGCCAAGGTGAACGTCGACGAGGAGCAGTTCATCGCTGCGCAGTTCCAGGTG
CGCTCGATCCCCACGGTCTATGCGATGTTCCAGGGCCAGCCCGTGGCGGACCTGACCCCCGCCCGCACCGAATCGCAGCT
CAGGCAGTACCTCGACCAGATCCTCGCCAAGGTGCCGGTCCAGGCCGGTGAGCCCGCGCAGGACGTGACGCCTCTGCTCG
CCATGGGCGAGGAGGTCCTGGCCGAAGGCGATGGCGAGCGTGCCGCCAGCATCTTTGCGCAGATCGTAGAGATCGCGCCC
GACAATGCCCAGGCCCACGCCGGACTCGTGCGCGCCCTGATCGCGGCGGGACAGAAGGACGAGGCGCAGGCCGTGCTCGA
TGCGCTCGACCCCGCGATGGCGGCGGATCCGGTCTTCGCCCAGGCGCGTTCGGCCCTGGCATTGGCCGAGGATGCGCCCG
AGGAAGGCGAACTGGCGACCCTGCGCGCCGCTGCGGCAGAACGGCCCGCTGACATGGACGCACAGCTTGCTTTCGCCAAC
GCGCTCTATGCAAGCGGCCAGCGCGACGAAGCGGCGGCCCGCCTGCTTGCCATGGTCGCCGCCGACCGCGAGTGGAACGA
GGGCGCGGCCAAGGCCCGCCTGCTCCAGATCTTCGAGGCCACCGGGCTCGAGGATCCCTGGGTTTCCGCCACGCGGCGCA
AGCTTTCGACCGTGCTGTTCGGCTGA

Upstream 100 bases:

>100_bases
GGAAAACCCCGTTTCCCCTTGCCGAACGCCGCCGCGTTCCCACATGGTGCGGCGAACCCGAACGACACCTAAAAGCACCT
GAATCTACCGGAGACGCATC

Downstream 100 bases:

>100_bases
CCGCGATGGGCGCGAACGCCAACGCCACGCGCCTGTCGATATTTCCGCTGACCGGCGCGGTGCTCTATCCGGGCCTGCAA
CTGCCGCTCCACATCTTCGA

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MASMGLNLEEQKAVDRFRSAVVEPSMTKLVILDFWAEWCGPCKALTPVLEKVAAEYADKGVVLAKVNVDEEQFIAAQFQV
RSIPTVYAMFQGQPVADLTPARTESQLRQYLDQILAKVPVQAGEPAQDVTPLLAMGEEVLAEGDGERAASIFAQIVEIAP
DNAQAHAGLVRALIAAGQKDEAQAVLDALDPAMAADPVFAQARSALALAEDAPEEGELATLRAAAAERPADMDAQLAFAN
ALYASGQRDEAAARLLAMVAADREWNEGAAKARLLQIFEATGLEDPWVSATRRKLSTVLFG

Sequences:

>Translated_301_residues
MASMGLNLEEQKAVDRFRSAVVEPSMTKLVILDFWAEWCGPCKALTPVLEKVAAEYADKGVVLAKVNVDEEQFIAAQFQV
RSIPTVYAMFQGQPVADLTPARTESQLRQYLDQILAKVPVQAGEPAQDVTPLLAMGEEVLAEGDGERAASIFAQIVEIAP
DNAQAHAGLVRALIAAGQKDEAQAVLDALDPAMAADPVFAQARSALALAEDAPEEGELATLRAAAAERPADMDAQLAFAN
ALYASGQRDEAAARLLAMVAADREWNEGAAKARLLQIFEATGLEDPWVSATRRKLSTVLFG
>Mature_300_residues
ASMGLNLEEQKAVDRFRSAVVEPSMTKLVILDFWAEWCGPCKALTPVLEKVAAEYADKGVVLAKVNVDEEQFIAAQFQVR
SIPTVYAMFQGQPVADLTPARTESQLRQYLDQILAKVPVQAGEPAQDVTPLLAMGEEVLAEGDGERAASIFAQIVEIAPD
NAQAHAGLVRALIAAGQKDEAQAVLDALDPAMAADPVFAQARSALALAEDAPEEGELATLRAAAAERPADMDAQLAFANA
LYASGQRDEAAARLLAMVAADREWNEGAAKARLLQIFEATGLEDPWVSATRRKLSTVLFG

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=87, Percent_Identity=41.3793103448276, Blast_Score=76, Evalue=5e-14,
Organism=Escherichia coli, GI87081747, Length=280, Percent_Identity=31.0714285714286, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082331, Length=87, Percent_Identity=40.2298850574713, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788936, Length=86, Percent_Identity=39.5348837209302, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI212646193, Length=115, Percent_Identity=35.6521739130435, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71980565, Length=94, Percent_Identity=36.1702127659575, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71980562, Length=94, Percent_Identity=36.1702127659575, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321648, Length=75, Percent_Identity=40, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24639826, Length=86, Percent_Identity=40.6976744186046, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI17648013, Length=75, Percent_Identity=44, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24583090, Length=75, Percent_Identity=44, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17530795, Length=80, Percent_Identity=37.5, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28573567, Length=95, Percent_Identity=35.7894736842105, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 32188; Mature: 32057

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASMGLNLEEQKAVDRFRSAVVEPSMTKLVILDFWAEWCGPCKALTPVLEKVAAEYADKG
CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
VVLAKVNVDEEQFIAAQFQVRSIPTVYAMFQGQPVADLTPARTESQLRQYLDQILAKVPV
EEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
QAGEPAQDVTPLLAMGEEVLAEGDGERAASIFAQIVEIAPDNAQAHAGLVRALIAAGQKD
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH
EAQAVLDALDPAMAADPVFAQARSALALAEDAPEEGELATLRAAAAERPADMDAQLAFAN
HHHHHHHHHCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
ALYASGQRDEAAARLLAMVAADREWNEGAAKARLLQIFEATGLEDPWVSATRRKLSTVLF
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure 
ASMGLNLEEQKAVDRFRSAVVEPSMTKLVILDFWAEWCGPCKALTPVLEKVAAEYADKG
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
VVLAKVNVDEEQFIAAQFQVRSIPTVYAMFQGQPVADLTPARTESQLRQYLDQILAKVPV
EEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
QAGEPAQDVTPLLAMGEEVLAEGDGERAASIFAQIVEIAPDNAQAHAGLVRALIAAGQKD
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCH
EAQAVLDALDPAMAADPVFAQARSALALAEDAPEEGELATLRAAAAERPADMDAQLAFAN
HHHHHHHHHCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
ALYASGQRDEAAARLLAMVAADREWNEGAAKARLLQIFEATGLEDPWVSATRRKLSTVLF
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]