Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 86751762

GI number: 86751762

Start: 5275273

End: 5276619

Strand: Reverse

Name: ugpB [H]

Synonym: RPB_4664

Alternate gene names: 86751762

Gene position: 5276619-5275273 (Counterclockwise)

Preceding gene: 86751772

Following gene: 86751761

Centisome position: 98.97

GC content: 64.59

Gene sequence:

>1347_bases
ATGGCTATCGGGAGTGATCGGCGATGCGGACGAGCCAGGATCCTACTGATATCCGCGGTTGTTCTGCTTGCAATCGCCGT
GGGCAACGCCCCCGCCCAGGCGGCGACCGAGATCGCATGGTGGCACGCGATGTCCGGCCAACTCGGCCGGGAGCTCGAAA
AGCTCGCCGCGGACTTCAACACGTCGCAATCCGACTACCGTGTGGTGCCCACCTACAAGGGCAACTACACCGAGGCGGTG
ACTGCCGCGATTTTCGCCTTCCGCTCGTCGAGCCAGCCGGCGATCGTGCAGGTCAACGAGATCGCGACCGCCACGATGAT
GGCGGCGAAAGGCGCGGTCTATCCGGTCTACGAATTGATGCGCGACGAAAAGGAAGCGTTCTCTCCGTCGGACTACCTTC
CCGCGGTCGCCGGCTATTATACCGATCTGGCCGGCAACATGCTGTCGTTTCCGTTCAACGCCTCGACCCCGATGCTGTAC
TACAACAAGTCGATGTTCAGAAAGGTCGGCCTCGACCCCGAGACGCCGCCGGCGACATGGCCTGACGTCGGCGCCGCGGC
GAAGCGGCTGGTCGCCGCCGGGGTGCCGTGCGGACTCACCACGTCGTGGCCGTCCTGGGTCAATGTCGAGAATTTCTCCG
CCTATCACAACCTCCCGCTCGCGACCCGGGCGAACGGCCTCGGCGGGATGGATGCAGTACTGGTCTTCAACAATCCCGTC
CTGGTTCGGCACATCGCCGAACTGGCGGAATGGCAGAAGACCAGGGTATTCGACTATGGTGGCCGCGCCACCGCCACGGA
GCCGCGATTCCAGCGGGGCGATTGCGGTATCTTCGTCGGCTCCTCGGCGACCCGCGCCGATATCATCGCCAATTCCAAAT
TCGAGGTCGGTTACGGCCGGCTGCCGTTCTGGCCGGACGTCGCCGGCGCGCCGCAAAACACCATTATCGGCGGCGCGACG
CTGTGGGTGCTGCGCGGCCGGCCGGCCGACGAATACAAAGGCGTCGCCAAGTTCTTCGCCTATCTGTCGCGCGCCGACGT
GCAGGCCGCCTGGCATCAAAACACGGGCTATCTGCCGGTGACGCGCGCCGCCTACGAACTGACGCGCGCGCAGGGATTCT
ACGAACGCAATCCCGGCACGGCGATCTCGATCGAGCAGATGACCCTGAAGCCGCCGACCGACAATTCGCGCGGATTGCGA
CTGGGCTCCTTCGTCCTGATCCGCGACGTCATTGACGACGAGCTCGAACAGGCGTTCAGCGGCCGAAAGCCGGCGCAGGC
GGCAATGGATTCCGCGGTCGAGCGCGGCAACAAGCTGCTGCGTCAGTTCGAACGGACCCAACCATGA

Upstream 100 bases:

>100_bases
ATCGCGGCTCGACTGGACAGCGGCAAGTTCGATCCCATAAGGTTGTGCCCCGCGACCGGGGCCGGAGAAGTCCCGACAAT
CTAGCAGACTGGCATAGGAA

Downstream 100 bases:

>100_bases
GCGGCATCGGCCGTTGGCCGCGTCGATCGATGGCGCCGGAATATCGCGGGCAGCGCGGGGTTGGATCCGTGCTGAAACCG
CTGATCATCGGCTGCGGTAG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MAIGSDRRCGRARILLISAVVLLAIAVGNAPAQAATEIAWWHAMSGQLGRELEKLAADFNTSQSDYRVVPTYKGNYTEAV
TAAIFAFRSSSQPAIVQVNEIATATMMAAKGAVYPVYELMRDEKEAFSPSDYLPAVAGYYTDLAGNMLSFPFNASTPMLY
YNKSMFRKVGLDPETPPATWPDVGAAAKRLVAAGVPCGLTTSWPSWVNVENFSAYHNLPLATRANGLGGMDAVLVFNNPV
LVRHIAELAEWQKTRVFDYGGRATATEPRFQRGDCGIFVGSSATRADIIANSKFEVGYGRLPFWPDVAGAPQNTIIGGAT
LWVLRGRPADEYKGVAKFFAYLSRADVQAAWHQNTGYLPVTRAAYELTRAQGFYERNPGTAISIEQMTLKPPTDNSRGLR
LGSFVLIRDVIDDELEQAFSGRKPAQAAMDSAVERGNKLLRQFERTQP

Sequences:

>Translated_448_residues
MAIGSDRRCGRARILLISAVVLLAIAVGNAPAQAATEIAWWHAMSGQLGRELEKLAADFNTSQSDYRVVPTYKGNYTEAV
TAAIFAFRSSSQPAIVQVNEIATATMMAAKGAVYPVYELMRDEKEAFSPSDYLPAVAGYYTDLAGNMLSFPFNASTPMLY
YNKSMFRKVGLDPETPPATWPDVGAAAKRLVAAGVPCGLTTSWPSWVNVENFSAYHNLPLATRANGLGGMDAVLVFNNPV
LVRHIAELAEWQKTRVFDYGGRATATEPRFQRGDCGIFVGSSATRADIIANSKFEVGYGRLPFWPDVAGAPQNTIIGGAT
LWVLRGRPADEYKGVAKFFAYLSRADVQAAWHQNTGYLPVTRAAYELTRAQGFYERNPGTAISIEQMTLKPPTDNSRGLR
LGSFVLIRDVIDDELEQAFSGRKPAQAAMDSAVERGNKLLRQFERTQP
>Mature_447_residues
AIGSDRRCGRARILLISAVVLLAIAVGNAPAQAATEIAWWHAMSGQLGRELEKLAADFNTSQSDYRVVPTYKGNYTEAVT
AAIFAFRSSSQPAIVQVNEIATATMMAAKGAVYPVYELMRDEKEAFSPSDYLPAVAGYYTDLAGNMLSFPFNASTPMLYY
NKSMFRKVGLDPETPPATWPDVGAAAKRLVAAGVPCGLTTSWPSWVNVENFSAYHNLPLATRANGLGGMDAVLVFNNPVL
VRHIAELAEWQKTRVFDYGGRATATEPRFQRGDCGIFVGSSATRADIIANSKFEVGYGRLPFWPDVAGAPQNTIIGGATL
WVLRGRPADEYKGVAKFFAYLSRADVQAAWHQNTGYLPVTRAAYELTRAQGFYERNPGTAISIEQMTLKPPTDNSRGLRL
GSFVLIRDVIDDELEQAFSGRKPAQAAMDSAVERGNKLLRQFERTQP

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=416, Percent_Identity=50.2403846153846, Blast_Score=448, Evalue=1e-127,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48933; Mature: 48802

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGSDRRCGRARILLISAVVLLAIAVGNAPAQAATEIAWWHAMSGQLGRELEKLAADFN
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
TSQSDYRVVPTYKGNYTEAVTAAIFAFRSSSQPAIVQVNEIATATMMAAKGAVYPVYELM
CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHH
RDEKEAFSPSDYLPAVAGYYTDLAGNMLSFPFNASTPMLYYNKSMFRKVGLDPETPPATW
HHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEECHHHHHHCCCCCCCCCCCC
PDVGAAAKRLVAAGVPCGLTTSWPSWVNVENFSAYHNLPLATRANGLGGMDAVLVFNNPV
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCH
LVRHIAELAEWQKTRVFDYGGRATATEPRFQRGDCGIFVGSSATRADIIANSKFEVGYGR
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEECCCCCCHHEEECCCEECCCCC
LPFWPDVAGAPQNTIIGGATLWVLRGRPADEYKGVAKFFAYLSRADVQAAWHQNTGYLPV
CCCCCCCCCCCCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
TRAAYELTRAQGFYERNPGTAISIEQMTLKPPTDNSRGLRLGSFVLIRDVIDDELEQAFS
HHHHHHHHHHCCCEECCCCCEEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHC
GRKPAQAAMDSAVERGNKLLRQFERTQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AIGSDRRCGRARILLISAVVLLAIAVGNAPAQAATEIAWWHAMSGQLGRELEKLAADFN
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
TSQSDYRVVPTYKGNYTEAVTAAIFAFRSSSQPAIVQVNEIATATMMAAKGAVYPVYELM
CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHH
RDEKEAFSPSDYLPAVAGYYTDLAGNMLSFPFNASTPMLYYNKSMFRKVGLDPETPPATW
HHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEECHHHHHHCCCCCCCCCCCC
PDVGAAAKRLVAAGVPCGLTTSWPSWVNVENFSAYHNLPLATRANGLGGMDAVLVFNNPV
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCH
LVRHIAELAEWQKTRVFDYGGRATATEPRFQRGDCGIFVGSSATRADIIANSKFEVGYGR
HHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEECCCCCCHHEEECCCEECCCCC
LPFWPDVAGAPQNTIIGGATLWVLRGRPADEYKGVAKFFAYLSRADVQAAWHQNTGYLPV
CCCCCCCCCCCCCCEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
TRAAYELTRAQGFYERNPGTAISIEQMTLKPPTDNSRGLRLGSFVLIRDVIDDELEQAFS
HHHHHHHHHHCCCEECCCCCEEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHC
GRKPAQAAMDSAVERGNKLLRQFERTQP
CCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]