The gene/protein map for NC_007778 is currently unavailable.
Definition Rhodopseudomonas palustris HaA2, complete genome.
Accession NC_007778
Length 5,331,656

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The map label for this gene is yxbG [H]

Identifier: 86751735

GI number: 86751735

Start: 5241547

End: 5242389

Strand: Reverse

Name: yxbG [H]

Synonym: RPB_4637

Alternate gene names: 86751735

Gene position: 5242389-5241547 (Counterclockwise)

Preceding gene: 86751740

Following gene: 86751733

Centisome position: 98.33

GC content: 67.14

Gene sequence:

>843_bases
ATGGGACGGCTGAACGGCAAGGTCGCGGTGATCACCGGCGCGACCAGCGGGATTGGTCTGCGCACGGCCGAGGTCTTCGT
CGCCGAGGGTGCTCACGTCGTGATCGCCGGCCGGCGTGCCCCGGAGGGAGAGGCGCTGGCGGCAAAGCTCGGGCCGTCCT
GCATTTTCAGGCAGACCGACGTCACCGCAGAGGATCAGATGAAGGCGCTGATCGGCCAGGCGATCGACTCCTTCGGCCGG
ATCGATTGCCTGTTCAACAATGCCGGCGGCCCGGCGCAGACCGGCGGCATCGAAGGCCTCGAGGCCGACCGGTTCGATGC
TGCGATGGCGACGCTGGTGCGCAGCGTGATGCTCGGCATGAAGCATGCCGCGCCGCACATGAAGAAACAGGGCTCGGGCT
CGATCATCAACAACGGCAGCATCGCCGGCCGGCTCGCCGGCTTCTCGTCATCGCTGGTGTACGGCGCCGCCAAGGCGGCG
GTGATCCATCTCACAAAATGCGTCGCGATGGAGCTCGGCGAGTCCGGCGTCCGGGTCAATTCGATCTCGCCCGGTGCGAT
CGCGACCGGCATCTTCGGCAAGGCGCTCGGCCTGACCACCGAGGCCGCGGAGAAAACCTCGGCGACGATGCGCGAAATCT
ACAAGACCGCGCAGCCGATCCAGCGTGCAGGACTACCCGAAGACATCGCGCACGCCGCGGTGTTTCTCGCCAGCGACGAG
TCGGGCTTCATCAACGGCCACGACCTGGTGATCGACGGCGGCATCACCGGCGGCCGCAACTGGACGCAGCAACAGCAGGG
CTACGTCGCGCTGCGCAAGGCGTTCGATCACGGCGAGGGGTGA

Upstream 100 bases:

>100_bases
TACTCGATTTGAATTGCGACACTGCGATTTATCATTAACAGAACGTCAATCAACAAGCCGAGCGCAGTGGAAACTGCGCC
GCAACAGGGGAGACGAGACG

Downstream 100 bases:

>100_bases
GCCGTCGTGATTGCGCGCTACTGCAGGGGCGCGATCCGCACCCGCAGGCCGTCTTTCGGCTTCGGGATCGGCCACATCTG
CCACGACGATTGATAGTTCG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MGRLNGKVAVITGATSGIGLRTAEVFVAEGAHVVIAGRRAPEGEALAAKLGPSCIFRQTDVTAEDQMKALIGQAIDSFGR
IDCLFNNAGGPAQTGGIEGLEADRFDAAMATLVRSVMLGMKHAAPHMKKQGSGSIINNGSIAGRLAGFSSSLVYGAAKAA
VIHLTKCVAMELGESGVRVNSISPGAIATGIFGKALGLTTEAAEKTSATMREIYKTAQPIQRAGLPEDIAHAAVFLASDE
SGFINGHDLVIDGGITGGRNWTQQQQGYVALRKAFDHGEG

Sequences:

>Translated_280_residues
MGRLNGKVAVITGATSGIGLRTAEVFVAEGAHVVIAGRRAPEGEALAAKLGPSCIFRQTDVTAEDQMKALIGQAIDSFGR
IDCLFNNAGGPAQTGGIEGLEADRFDAAMATLVRSVMLGMKHAAPHMKKQGSGSIINNGSIAGRLAGFSSSLVYGAAKAA
VIHLTKCVAMELGESGVRVNSISPGAIATGIFGKALGLTTEAAEKTSATMREIYKTAQPIQRAGLPEDIAHAAVFLASDE
SGFINGHDLVIDGGITGGRNWTQQQQGYVALRKAFDHGEG
>Mature_279_residues
GRLNGKVAVITGATSGIGLRTAEVFVAEGAHVVIAGRRAPEGEALAAKLGPSCIFRQTDVTAEDQMKALIGQAIDSFGRI
DCLFNNAGGPAQTGGIEGLEADRFDAAMATLVRSVMLGMKHAAPHMKKQGSGSIINNGSIAGRLAGFSSSLVYGAAKAAV
IHLTKCVAMELGESGVRVNSISPGAIATGIFGKALGLTTEAAEKTSATMREIYKTAQPIQRAGLPEDIAHAAVFLASDES
GFINGHDLVIDGGITGGRNWTQQQQGYVALRKAFDHGEG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=37.5545851528384, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=35.8267716535433, Blast_Score=121, Evalue=6e-28,
Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=32.8125, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=29.9242424242424, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=35.5212355212355, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=30.1960784313725, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=32.0754716981132, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=30.1204819277108, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI4758504, Length=265, Percent_Identity=33.2075471698113, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=260, Percent_Identity=29.6153846153846, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=33, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=32.4607329842932, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI83715985, Length=265, Percent_Identity=31.3207547169811, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=29.0196078431373, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=28.0632411067194, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=29.1891891891892, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=30.0518134715026, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=34.7490347490347, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787905, Length=262, Percent_Identity=34.3511450381679, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=34.3873517786561, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=33.201581027668, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=30.1587301587302, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=30.5882352941176, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790717, Length=255, Percent_Identity=31.7647058823529, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=30.1960784313725, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=28.1746031746032, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=28.8537549407115, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787820, Length=187, Percent_Identity=29.9465240641711, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI2367365, Length=255, Percent_Identity=28.2352941176471, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=37.9699248120301, Blast_Score=147, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI17562908, Length=276, Percent_Identity=35.5072463768116, Blast_Score=134, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=36.4661654135338, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=34.9624060150376, Blast_Score=130, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=37.3584905660377, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17560332, Length=277, Percent_Identity=36.101083032491, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=36.1940298507463, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=35.0943396226415, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=33.5849056603774, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=36.0902255639098, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=37.546468401487, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=34.1085271317829, Blast_Score=123, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=37.3584905660377, Blast_Score=123, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=35.0943396226415, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=34.0909090909091, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=34.9809885931559, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=32.8185328185328, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=32.295719844358, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=32.7137546468402, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17560676, Length=263, Percent_Identity=30.4182509505703, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17565030, Length=278, Percent_Identity=32.7338129496403, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=256, Percent_Identity=30.078125, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI25147288, Length=261, Percent_Identity=31.8007662835249, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=30.188679245283, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI212645366, Length=259, Percent_Identity=30.1158301158301, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=28.515625, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193207185, Length=147, Percent_Identity=38.7755102040816, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=272, Percent_Identity=31.9852941176471, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=25.9541984732824, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=218, Percent_Identity=27.5229357798165, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=261, Percent_Identity=28.735632183908, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=264, Percent_Identity=29.9242424242424, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=31.0526315789474, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=232, Percent_Identity=27.1551724137931, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=188, Percent_Identity=27.1276595744681, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=37.7952755905512, Blast_Score=139, Evalue=1e-33,
Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=36.8217054263566, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=35.6589147286822, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=34.1176470588235, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=34.7490347490347, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24639444, Length=258, Percent_Identity=28.2945736434109, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24644337, Length=258, Percent_Identity=33.7209302325581, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=30, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI281364494, Length=208, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI116007236, Length=268, Percent_Identity=27.6119402985075, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21358495, Length=204, Percent_Identity=28.4313725490196, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI18859837, Length=208, Percent_Identity=31.7307692307692, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28847; Mature: 28716

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MGRLNGKVAVITGATSGIGLRTAEVFVAEGAHVVIAGRRAPEGEALAAKLGPSCIFRQTD
CCCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHCCCCCEEECCC
VTAEDQMKALIGQAIDSFGRIDCLFNNAGGPAQTGGIEGLEADRFDAAMATLVRSVMLGM
CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KHAAPHMKKQGSGSIINNGSIAGRLAGFSSSLVYGAAKAAVIHLTKCVAMELGESGVRVN
HHCCCHHHCCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
SISPGAIATGIFGKALGLTTEAAEKTSATMREIYKTAQPIQRAGLPEDIAHAAVFLASDE
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCC
SGFINGHDLVIDGGITGGRNWTQQQQGYVALRKAFDHGEG
CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GRLNGKVAVITGATSGIGLRTAEVFVAEGAHVVIAGRRAPEGEALAAKLGPSCIFRQTD
CCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCCCCCHHHHHCCCCCEEECCC
VTAEDQMKALIGQAIDSFGRIDCLFNNAGGPAQTGGIEGLEADRFDAAMATLVRSVMLGM
CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KHAAPHMKKQGSGSIINNGSIAGRLAGFSSSLVYGAAKAAVIHLTKCVAMELGESGVRVN
HHCCCHHHCCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
SISPGAIATGIFGKALGLTTEAAEKTSATMREIYKTAQPIQRAGLPEDIAHAAVFLASDE
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCC
SGFINGHDLVIDGGITGGRNWTQQQQGYVALRKAFDHGEG
CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]