| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is lhr [C]
Identifier: 86751711
GI number: 86751711
Start: 5210782
End: 5213595
Strand: Reverse
Name: lhr [C]
Synonym: RPB_4613
Alternate gene names: 86751711
Gene position: 5213595-5210782 (Counterclockwise)
Preceding gene: 86751712
Following gene: 86751710
Centisome position: 97.79
GC content: 68.27
Gene sequence:
>2814_bases GTGACCATCGCCGATTCCGACGCTCCCCTCGATCTGCTGCCCGACCGCTTTCGGCACTGGTTCGCCGCACGCGGCTGGAC GCCGCGCGCGCACCAGCTAGCGTTGCTGCGACAGGCGCGCGCGCAACGCTCGGCGCTGCTGATCGCCCCGACCGGCGCCG GCAAGACACTGGCGGGCTTTTTGCCGACGCTGGTGGAGTTGAGCGAGGCGGCGCCTAACCTCTCCCCGATTGCGGGGAGA GGTCGACTAGCTGGCGTAGCCGGCAAGTCGGGTGAGGGGGCTGATGAGTTGCCCATTGCCGGGGCAGCTGTGTGCGCCGA GGCGCCCCCTCACCCGGCGCGCCGAGCTGCGCTTGCCGCGCCACCCTCTCCCCGCGCGCGGGGAGAGGGTTCGAGCCGCG GTCTCCATACACTGTATATTTCGCCGCTGAAGGCGCTGGCGGTCGACATCGCCCGCAATCTCGAAGCGCCGATCGCGCAG ATGAATCTGCCGATCCGGGTCGAGACCCGCACCGGCGACACGCCGGTGTCGCGACGCGCGAGGCAACGCAAATATCCGCC GGACATTCTGCTGACCACGCCGGAACAGCTCGCGCTGCTGCTGGCGTCCGACGATGCGCCCTATCTGTTCGGTTCCCTGC AGCGCATCGTGCTCGACGAGCTGCACGCGCTGGTGACCTCGAAGCGCGGCGATCTGCTGTCGCTGGGGCTGGCGCGGCTT TGGCGGATCGCGCCGCAGCTTCGCGCCACCGGGCTATCGGCGACGGTCGCCGATCCCGATGAGCTCGCGCGCTTCCTGGT GCCGCAGCCGTTCGTTCCCTCTCCCCTTGTGGGAGAGGGTGGCGCCGAACGCAGTGAGGCGACGGGTGAGGGGGCGAGCG CGGGCGCCGAGCCCGCAGCCTACCCCTCACCCCGGCCCTCTCCCACAAGGGGAGAGGGAGAACAGGCCGACATCGTCGTC GCCCGCGGCGCGGCGCAGCCGATCGTCGAGATGCTCGACACCAAGGAGCGGCTGCCCTGGGCCGGGCATTCGGCGCGCCA TGCGCTGGCCGAGATCTACGACCTGATCCGGCGCAACACCACCACGCTGGTGTTCGTCAACACCCGCAGCCAGGCGGAGA TGCTGTTCCAGGAACTCTGGCGCATGAACGACGACAATCTGGCGATCGCGCTGCATCACGGTTCGCTCGACGTCGCGCAG CGCCGCAAGGTCGAGGACGCGATGGCGGCGGGGCGGCTGCGTGGCGTGGTGTGCACCTCTTCGCTCGATCTCGGCATCGA CTGGGGCGACATCGACCTGGTCGTCAATGTCGGCGCGCCGAAAGGCTCGTCGCGGCTGATGCAGCGGATCGGCCGCGCCA ATCACCGGCTCGACGAGGCGTCGCGCGCGGTGCTGGTGCCGGCCAATCGCTTCGAAGTGCTGGAATGCGCTGCCGCAATC GATGCGGTCGCCGAAAACGCGCAGGACACCCCGCCGCAACGCACCGGCGCGCTCGACGTGCTGGCGCAGCACATCCTCGG CTGCGCCTGCGGCGAGCCGTTCGTCGCAGATGAATTGTACAAGGAAGTGCGGAGTGCGGCACCTTACGCCGATCTCAGCC GGGCTGATTTCGACGATACGCTCGATTTCGTCGCCACCGGCGGCTACGCGCTGAAGAGCTATGAGCGCTTCGCGCGCATC AGGCAGGACAAGCAGGGCAAGTGGCGCGTCGCCAATCCGAAGGTGCGGCAGGCTTATCGCCTGAATGTCGGCACCATCGT CGAGGAGGCGATGCTGAAGGTGAAGCTGGTGCGCTCGGCGAAGTCCAAAGGCGGCGGCCATACCGGCGCGATCGCGCGCG GCGGCCGGATGCTCGGCCAGATCGAGGAGTACTTCATCGAGGGCCTGACGCCGGGCGACACCTTCGTGTTCGGCGGCGAG GTGGTGCGCTACGAGGCGCTGATGGAGGATCAGGTCTACGTCTCCCGCGCGCACGACAAGGATGCGCGGGTGCCGTCCTA TATGGGCGGCAAGTTCCCGCTCTCGACCTATCTGGCCGAACGCGTCCGCGGGTTGCTCGCCGACAAGCAGGCGTGGAAGG GGCTTCCTGATCAAGTGCGTGACTGGCTCGCGCTGCAGAGCAAGGCGTCGCGCGTGCCGGGCCGCAGCGAGCTCGTGGTC GAAACCTTTCCGCGCGCCGCCAAATACTACCTGGTCTGCTACCCGTTCGAAGGACGGCTGGCGCATCAGACGCTCGGCAT GCTGCTGACGCGGCGGCTGGAGCGTGCCCGCGCCCGGCCGCTCGGCTTCGTCGCCAACGAATATGCGCTCGCAGTGTGGG GGCTCGGCGATACGTCTCACATGATCCGGCAGGGGCGGCTCGATCTCGACGCGCTGTTCGATCCGGATATGCTCGGCGAC GATCTCGAAGCCTGGCTCGCCGAATCGGCGCTGATGAAACGCACCTTCCGTTACGCGGCGATCATCTCCGGGCTGATCGC GCGGCGCTTCGCCGGCGAGGAAAAATCGCGGCGCCAGGTGCTGTTCTCGACTGACCTGGTCTACGACGTGCTCAACAAGC ACCAGCCCGACCACGTGCTGTTGCGCGCCGCGCGCGCCGACGCCGCCACGGGGCTGCTCGATTTACGGCGCCTCAGTGAT ATGCTGACGCGAATCAAGGGGCGCATCGTCCACAAGGAACTCGATCGCGTGTCGCCGCTGGCGGTGCCGGTGATGCTGGA AATCGGCCGCGAAGCCGTGTACGGCGAGGCTTCCGACGAACTGCTCGCCGACGCGGCCGACGAACTGGTGCGCGAGGCGA CCGAGCGTCGCTAG
Upstream 100 bases:
>100_bases ACGCCCGCCTTCGGCGGGCGTTTTGCGTTTCCGGATCGCATGGCCGGCGGAGCCGCGCGACGATCTCGATTTTGACGCGA CGAATGCCTAGCTTGGCGAT
Downstream 100 bases:
>100_bases AAGAACTGGATGTTCCGCATCCGCTCCGTCATGCCCGGGCTTGTCCCGGGCATCCACGACCACTGCTTCCCCCCGTGTCC ATCGTGATGGCCGGGACGAG
Product: DEAD/DEAH box helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 937; Mature: 936
Protein sequence:
>937_residues MTIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGFLPTLVELSEAAPNLSPIAGR GRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAAPPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQ MNLPIRVETRTGDTPVSRRARQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAAYPSPRPSPTRGEGEQADIVV ARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQ RRKVEDAMAAGRLRGVVCTSSLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDTLDFVATGGYALKSYERFARI RQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSAKSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGE VVRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSHMIRQGRLDLDALFDPDMLGD DLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSD MLTRIKGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDELLADAADELVREATERR
Sequences:
>Translated_937_residues MTIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGFLPTLVELSEAAPNLSPIAGR GRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAAPPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQ MNLPIRVETRTGDTPVSRRARQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAAYPSPRPSPTRGEGEQADIVV ARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQ RRKVEDAMAAGRLRGVVCTSSLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDTLDFVATGGYALKSYERFARI RQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSAKSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGE VVRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSHMIRQGRLDLDALFDPDMLGD DLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSD MLTRIKGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDELLADAADELVREATERR >Mature_936_residues TIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGFLPTLVELSEAAPNLSPIAGRG RLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAAPPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQM NLPIRVETRTGDTPVSRRARQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARLW RIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAAYPSPRPSPTRGEGEQADIVVA RGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNTTTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQR RKVEDAMAAGRLRGVVCTSSLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAID AVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDTLDFVATGGYALKSYERFARIR QDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSAKSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGEV VRYEALMEDQVYVSRAHDKDARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVVE TFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSHMIRQGRLDLDALFDPDMLGDD LEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQVLFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSDM LTRIKGRIVHKELDRVSPLAVPVMLEIGREAVYGEASDELLADAADELVREATERR
Specific function: Unknown
COG id: COG1201
COG function: function code R; Lhr-like helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787942, Length=1000, Percent_Identity=27.5, Blast_Score=239, Evalue=8e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR013701 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR017170 [H]
Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]
EC number: 3.6.1.-
Molecular weight: Translated: 102322; Mature: 102191
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGF CCCCCCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH LPTLVELSEAAPNLSPIAGRGRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAA HHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCC PPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQMNLPIRVETRTGDTPVSRRA CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCHHHHHH RQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL HHCCCCCCEEEECHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAA HHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC YPSPRPSPTRGEGEQADIVVARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNT CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC TTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQRRKVEDAMAAGRLRGVVCTS CEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEC SLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDT HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH LDFVATGGYALKSYERFARIRQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSA HHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH KSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGEVVRYEALMEDQVYVSRAHDK HHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC DARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHH ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSH HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCHHH MIRQGRLDLDALFDPDMLGDDLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQV HHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE LFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSDMLTRIKGRIVHKELDRVSPL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AVPVMLEIGREAVYGEASDELLADAADELVREATERR HHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TIADSDAPLDLLPDRFRHWFAARGWTPRAHQLALLRQARAQRSALLIAPTGAGKTLAGF CCCCCCCCHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH LPTLVELSEAAPNLSPIAGRGRLAGVAGKSGEGADELPIAGAAVCAEAPPHPARRAALAA HHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCHHHHCCCCC PPSPRARGEGSSRGLHTLYISPLKALAVDIARNLEAPIAQMNLPIRVETRTGDTPVSRRA CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCCCCHHHHHH RQRKYPPDILLTTPEQLALLLASDDAPYLFGSLQRIVLDELHALVTSKRGDLLSLGLARL HHCCCCCCEEEECHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH WRIAPQLRATGLSATVADPDELARFLVPQPFVPSPLVGEGGAERSEATGEGASAGAEPAA HHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC YPSPRPSPTRGEGEQADIVVARGAAQPIVEMLDTKERLPWAGHSARHALAEIYDLIRRNT CCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC TTLVFVNTRSQAEMLFQELWRMNDDNLAIALHHGSLDVAQRRKVEDAMAAGRLRGVVCTS CEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEC SLDLGIDWGDIDLVVNVGAPKGSSRLMQRIGRANHRLDEASRAVLVPANRFEVLECAAAI CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHH DAVAENAQDTPPQRTGALDVLAQHILGCACGEPFVADELYKEVRSAAPYADLSRADFDDT HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH LDFVATGGYALKSYERFARIRQDKQGKWRVANPKVRQAYRLNVGTIVEEAMLKVKLVRSA HHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH KSKGGGHTGAIARGGRMLGQIEEYFIEGLTPGDTFVFGGEVVRYEALMEDQVYVSRAHDK HHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC DARVPSYMGGKFPLSTYLAERVRGLLADKQAWKGLPDQVRDWLALQSKASRVPGRSELVV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHH ETFPRAAKYYLVCYPFEGRLAHQTLGMLLTRRLERARARPLGFVANEYALAVWGLGDTSH HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCHHH MIRQGRLDLDALFDPDMLGDDLEAWLAESALMKRTFRYAAIISGLIARRFAGEEKSRRQV HHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEE LFSTDLVYDVLNKHQPDHVLLRAARADAATGLLDLRRLSDMLTRIKGRIVHKELDRVSPL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH AVPVMLEIGREAVYGEASDELLADAADELVREATERR HHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]