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The map label for this gene is agmR [H]

Identifier: 86751663

GI number: 86751663

Start: 5164042

End: 5164716

Strand: Reverse

Name: agmR [H]

Synonym: RPB_4565

Alternate gene names: 86751663

Gene position: 5164716-5164042 (Counterclockwise)

Preceding gene: 86751665

Following gene: 86751657

Centisome position: 96.87

GC content: 66.81

Gene sequence:

>675_bases
ATGAGCACGCCCGCCAGCACGCATTTGATCATTGCCGATGACCACCCGCTGTTCCGCGACGCCTTGCGGTTGGCGGTTTC
CAGCGTCGTTCCCGGTGCGAAGATCGGCGAGGCCGGGTCGTTCGAGGACCTCACCGCGATGCTCGAGCGCGACGGCGACG
TCGATCTTGTCCTGCTCGACCTGAAGATGCCCGGGATCAGCGGATTTTCCGGGCTGATCTATCTGCGCGCGCAGTATCCG
GCGATCCCCGTCGTGGTGGTCTCGGCCAGCGACGATGTCGAGACCATCCGGCGCTCGCTGGATTTCGGCGCGTCCGGTTT
CGTGCCGAAGCGGTTCGGGGTCGAGAAGCTCGGCGACGCGATCCTGCGGGTGCTGGACGGCGACGTCTGGGTGCCGCCGG
ATGTCGATCTGTCGGCGGCCGCCGATCCGGAGACCAGCAAGCTGCGCGACCGGCTGGTGACGCTGACACCGCAGCAGGTG
CGGGTGCTGATGATGCTGTCCGAAGGGCTGCTCAACAAGCAGATCGCCTACGAGCTCGGCGTCTCGGAAGCCACCATCAA
GGCGCATGTCTCGGCGATCCTGCAGAAGCTCGGCGTCGAAAGCCGCACCCAGGCGGTGATCGCCGCGGCGAAGATCTCCG
GCAGCCAGTGGCGCCAGGACGAGCCGGTGGCGTAG

Upstream 100 bases:

>100_bases
CTTGCCAGCCGTCGACCTTAGGGCGACACTTCCAATCCGACCTGCCAACCGCGGGCCTGAATGCGACCGTTCGGTTCCAG
TCTGCGCACAAGGGACACCC

Downstream 100 bases:

>100_bases
CCGCCGACTCCGTTCACTTTCCGAATACCGAATATTCGTCATGGCCGGGCTCGTCCCGGCCATCCACGCCTTTCTTGCGG
CTTCCGCTGCAAGACGTGGA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSTPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLERDGDVDLVLLDLKMPGISGFSGLIYLRAQYP
AIPVVVVSASDDVETIRRSLDFGASGFVPKRFGVEKLGDAILRVLDGDVWVPPDVDLSAAADPETSKLRDRLVTLTPQQV
RVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAKISGSQWRQDEPVA

Sequences:

>Translated_224_residues
MSTPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLERDGDVDLVLLDLKMPGISGFSGLIYLRAQYP
AIPVVVVSASDDVETIRRSLDFGASGFVPKRFGVEKLGDAILRVLDGDVWVPPDVDLSAAADPETSKLRDRLVTLTPQQV
RVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAKISGSQWRQDEPVA
>Mature_223_residues
STPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLERDGDVDLVLLDLKMPGISGFSGLIYLRAQYPA
IPVVVVSASDDVETIRRSLDFGASGFVPKRFGVEKLGDAILRVLDGDVWVPPDVDLSAAADPETSKLRDRLVTLTPQQVR
VLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVESRTQAVIAAAKISGSQWRQDEPVA

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=219, Percent_Identity=32.8767123287671, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1786747, Length=195, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789937, Length=200, Percent_Identity=25.5, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787473, Length=211, Percent_Identity=32.2274881516588, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788546, Length=208, Percent_Identity=25.9615384615385, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790102, Length=168, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788222, Length=194, Percent_Identity=22.1649484536082, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24015; Mature: 23884

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLERDGDVDLVLLD
CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
LKMPGISGFSGLIYLRAQYPAIPVVVVSASDDVETIRRSLDFGASGFVPKRFGVEKLGDA
EECCCCCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
ILRVLDGDVWVPPDVDLSAAADPETSKLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELG
HHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHVSAILQKLGVESRTQAVIAAAKISGSQWRQDEPVA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
STPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLERDGDVDLVLLD
CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
LKMPGISGFSGLIYLRAQYPAIPVVVVSASDDVETIRRSLDFGASGFVPKRFGVEKLGDA
EECCCCCCCCEEEEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
ILRVLDGDVWVPPDVDLSAAADPETSKLRDRLVTLTPQQVRVLMMLSEGLLNKQIAYELG
HHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCC
VSEATIKAHVSAILQKLGVESRTQAVIAAAKISGSQWRQDEPVA
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]