| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86751078
Identifier: 86751078
GI number: 86751078
Start: 4534740
End: 4535816
Strand: Reverse
Name: 86751078
Synonym: RPB_3970
Alternate gene names: NA
Gene position: 4535816-4534740 (Counterclockwise)
Preceding gene: 86751079
Following gene: 86751077
Centisome position: 85.07
GC content: 64.81
Gene sequence:
>1077_bases ATGGTCTCGTATCTGGGCCCCCCCATCTTCGCGGCGTTCGTCTGGTGGTTCTCCACCGGCGCCGTGATGCTGCTGGTCGG CAGCGTCGGCCGTTCCGGCATGTTGCGGGTGGTCTGCGCCGGCGGAATGATCACCATCGCGCTGTGCGGCCTGTCGGTGA CGGCTAACGACACCAGCGTCGCCGCCGCCTATATGGCCTTCAGCTGCATCATCTTTCTGTGGGGCGCGCAGGAGATCGCG TTTCTGTCCGGCTGGCTGACCGGCCCGCGGGCCGAGCCTTGTCCGCCCGGCGCAAAGGGGTTCGCCCGCCTCAGCTTCGC GTTGCAGGCGATCATCTACCACGAGATCTGCCTGCTCGCCTGCGGCGCGGTCGTGGTGCTGGTCACCCTCGGCGCCGAGA ACGAAGTCGGTCGCTGGACCTATCTGGCGCTGTGGGTGCTGCGTCAGAGCGCCAAGATCAATCTGTTTCTGGGCGTGCCC GTCACCAACGACGAGCTGATGCCGGACGCCGTGCAGTTCCTCAAGACGTACTTCGCGCGCAAGCCCGTGAGCGCGTTCTT CCCGATCTCGGTGACGCTGGCGACCGTCGTTCTGATGGCGATGATCCAGCGCATCGTCGAGGTTGCCGACACGCCGTCCG AAATCGTCGGCCTGACGCTGGTATCGACTTTATTCGCTCTTGGCGTCGTCGAGCATTGGTTCATGCTGCTACCGCTGCCT GCCATCACGTTGTGGAGCTGGGGTATCCGTCCAGGTTTCTCGCCGGAGAACGTCACCATGGAACAGAATCCATCCGCCAA TATCGCTGCTGCGTCCGAGCACGCTGCGTCGACGCAGACTCCCGAAACACCGTTGGCCGGCGCCGAGGCGAGAAGCACGG TACCGCAGCTCGTCGTGGTGCCGAGCACCCGCAACGAGTTGGCCCCGCCGAAGGAGCGTTCGAATTGCGCCCGGCAGCGG CTCGAAGAACAGTTCCGCCAGACTTTTCTCGAACAGCATTCGCGCAGTGGTCTGGCGCCGGCCCGGGTCGGAATCTCAGC GGAACCGGCCGCGACCATCAACGGGAGGACGTCATGA
Upstream 100 bases:
>100_bases GCGGCGTTGGCCTTCGGCCGGCTTTTCCTTCTGCCGGCGAAGCGCAACGAGTTGCCGCGCGTCATCGGCCTTCGGCCGGC GTGGTGAGGGGAGCGGCGCG
Downstream 100 bases:
>100_bases ACTACGAAGCCTATTTCCGCCGTCAGCTCGAAGGCCTGCATCGTGAGGGCCGGTATCGGGTGTTCGCCGATCTGGAACGC CATGCCGGCGCCTATCCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: ORF274 [H]
Number of amino acids: Translated: 358; Mature: 358
Protein sequence:
>358_residues MVSYLGPPIFAAFVWWFSTGAVMLLVGSVGRSGMLRVVCAGGMITIALCGLSVTANDTSVAAAYMAFSCIIFLWGAQEIA FLSGWLTGPRAEPCPPGAKGFARLSFALQAIIYHEICLLACGAVVVLVTLGAENEVGRWTYLALWVLRQSAKINLFLGVP VTNDELMPDAVQFLKTYFARKPVSAFFPISVTLATVVLMAMIQRIVEVADTPSEIVGLTLVSTLFALGVVEHWFMLLPLP AITLWSWGIRPGFSPENVTMEQNPSANIAAASEHAASTQTPETPLAGAEARSTVPQLVVVPSTRNELAPPKERSNCARQR LEEQFRQTFLEQHSRSGLAPARVGISAEPAATINGRTS
Sequences:
>Translated_358_residues MVSYLGPPIFAAFVWWFSTGAVMLLVGSVGRSGMLRVVCAGGMITIALCGLSVTANDTSVAAAYMAFSCIIFLWGAQEIA FLSGWLTGPRAEPCPPGAKGFARLSFALQAIIYHEICLLACGAVVVLVTLGAENEVGRWTYLALWVLRQSAKINLFLGVP VTNDELMPDAVQFLKTYFARKPVSAFFPISVTLATVVLMAMIQRIVEVADTPSEIVGLTLVSTLFALGVVEHWFMLLPLP AITLWSWGIRPGFSPENVTMEQNPSANIAAASEHAASTQTPETPLAGAEARSTVPQLVVVPSTRNELAPPKERSNCARQR LEEQFRQTFLEQHSRSGLAPARVGISAEPAATINGRTS >Mature_358_residues MVSYLGPPIFAAFVWWFSTGAVMLLVGSVGRSGMLRVVCAGGMITIALCGLSVTANDTSVAAAYMAFSCIIFLWGAQEIA FLSGWLTGPRAEPCPPGAKGFARLSFALQAIIYHEICLLACGAVVVLVTLGAENEVGRWTYLALWVLRQSAKINLFLGVP VTNDELMPDAVQFLKTYFARKPVSAFFPISVTLATVVLMAMIQRIVEVADTPSEIVGLTLVSTLFALGVVEHWFMLLPLP AITLWSWGIRPGFSPENVTMEQNPSANIAAASEHAASTQTPETPLAGAEARSTVPQLVVVPSTRNELAPPKERSNCARQR LEEQFRQTFLEQHSRSGLAPARVGISAEPAATINGRTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017496 [H]
Pfam domain/function: PF12291 DUF3623 [H]
EC number: NA
Molecular weight: Translated: 38453; Mature: 38453
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSYLGPPIFAAFVWWFSTGAVMLLVGSVGRSGMLRVVCAGGMITIALCGLSVTANDTSV CCCCCCCHHHHHHHHHHHCCHHEEHHHHCCCCCCEEEEECCCCEEEHHCCCEEECCCHHH AAAYMAFSCIIFLWGAQEIAFLSGWLTGPRAEPCPPGAKGFARLSFALQAIIYHEICLLA HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CGAVVVLVTLGAENEVGRWTYLALWVLRQSAKINLFLGVPVTNDELMPDAVQFLKTYFAR HHHHHHHHEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC KPVSAFFPISVTLATVVLMAMIQRIVEVADTPSEIVGLTLVSTLFALGVVEHWFMLLPLP CCCCHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITLWSWGIRPGFSPENVTMEQNPSANIAAASEHAASTQTPETPLAGAEARSTVPQLVVV HHHHHHCCCCCCCCCCCCEECCCCCCCEEECCHHCCCCCCCCCCCCCCHHHCCCCCEEEE PSTRNELAPPKERSNCARQRLEEQFRQTFLEQHSRSGLAPARVGISAEPAATINGRTS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MVSYLGPPIFAAFVWWFSTGAVMLLVGSVGRSGMLRVVCAGGMITIALCGLSVTANDTSV CCCCCCCHHHHHHHHHHHCCHHEEHHHHCCCCCCEEEEECCCCEEEHHCCCEEECCCHHH AAAYMAFSCIIFLWGAQEIAFLSGWLTGPRAEPCPPGAKGFARLSFALQAIIYHEICLLA HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CGAVVVLVTLGAENEVGRWTYLALWVLRQSAKINLFLGVPVTNDELMPDAVQFLKTYFAR HHHHHHHHEECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC KPVSAFFPISVTLATVVLMAMIQRIVEVADTPSEIVGLTLVSTLFALGVVEHWFMLLPLP CCCCHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AITLWSWGIRPGFSPENVTMEQNPSANIAAASEHAASTQTPETPLAGAEARSTVPQLVVV HHHHHHCCCCCCCCCCCCEECCCCCCCEEECCHHCCCCCCCCCCCCCCHHHCCCCCEEEE PSTRNELAPPKERSNCARQRLEEQFRQTFLEQHSRSGLAPARVGISAEPAATINGRTS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA