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The map label for this gene is rbcL [H]

Identifier: 86751072

GI number: 86751072

Start: 4525057

End: 4526514

Strand: Reverse

Name: rbcL [H]

Synonym: RPB_3964

Alternate gene names: 86751072

Gene position: 4526514-4525057 (Counterclockwise)

Preceding gene: 86751073

Following gene: 86751071

Centisome position: 84.9

GC content: 63.99

Gene sequence:

>1458_bases
ATGAACGAGTCAGTCACCGTCCGCGGCAAGGATCGCTACAAATCCGGCGTGATGGAATACAAGAAGATGGGCTATTGGGA
GCCCGACTACGAGCCCAAAGACACCGACGTCATCGCGCTGTTCCGTGTCACGCCGCAGGACGGCGTGGATCCGATCGAGG
CATCGGCAGCGGTGGCCGGCGAGTCTTCGACCGCGACCTGGACCGTGGTGTGGACCGACCGTCTGACCGCGGCGGAGAAG
TACCGCGCGAAGTGCTATCGCGTCGATCCGGTGCCGAATTCGCCCGGCCAGTATTTCGCTTACATCGCCTACGATCTCGA
CCTGTTCGAGAATGGCTCGATCGCCAATCTGTCGGCGTCGATCATCGGCAACGTGTTCGGCTTCAAGCCACTGAAAGCGC
TGCGGCTCGAGGACATGCGGCTGCCGGTCGCCTATGTGAAGACGTTCCAGGGCCCCGCCACCGGCATCGTGGTCGAGCGC
GAGCGGATGGACAAGTTCGGACGTCCCTTGCTCGGCGCCACCGTCAAGCCGAAGCTCGGCCTGTCGGGCCGCAACTACGG
CCGCGTCGTCTACGAGGCGCTGAAGGGCGGGCTCGACTTCACCAAGGACGACGAGAACATCAACTCGCAGCCGTTCATGC
ATTGGCGCGAGCGCTTCCTGTATTGCATGGAGGCGGTGAACAAGGCGCAGGCGGCGTCGGGCGAGATCAAGGGCACCTAT
CTCAACGTCACCGCCGGCACCATGGAGGAGATGTACGAGCGCGCCGAATTCGCCAAACAGCTCGGCTCGGTGATCATCAT
GATCGACCTGGTGATCGGCTACACCGCGATCCAGTCGATGGCGAAATGGGCACGCAAGAACGACATGATCTTGCATCTGC
ATCGCGCCGGCCATTCGACCTACACCCGCCAGCGCAATCACGGCGTGTCGTTCCGCGTCATCGCCAAATGGATGCGGCTC
GCCGGCGTCGATCACATCCATGCCGGCACCGTGGTCGGCAAGCTCGAAGGCGATCCGGCGACCACCAAGGGCTACTACGA
CATCTGCCGCGAGGACTACAACCCGGCGAATCTCGAGCACGGCCTGTTCTTCGACCAGCACTGGGCCAGCCTGAACAAGC
TGATGCCGGTGGCCTCGGGCGGCATCCATGCCGGCCAGATGCACCAGCTGCTCGACCTGCTCGGTGAGGACGTCGTGCTG
CAGTTCGGCGGCGGCACCATCGGCCACCCGATGGGCATCGCGGCCGGCGCCACCGCCAATCGCGTCGCGCTGGAGGCGAT
GATCCTCGCTCGCAACGAGGGCCGCGACTACGTGCACGAAGGCCCGGAGATTCTCGCCAAGGCGGCGCAGACCTGCACGC
CGCTGAAGGCTGCGCTCGACACCTGGAAGAACGTGTCCTTCAATTACGAATCCACCGACACCCCCGACTACGCGCCGACC
CCCAGCGTCTCGGTCTAA

Upstream 100 bases:

>100_bases
CGAATTCGCGACGCCGACTGCCCGATTTGTACGTCGCGCCCCAACGGCATCCAGTCACCCGGCCCGACACGGCCGCCGGG
ATTTTTCAAGGAGGAGCGAC

Downstream 100 bases:

>100_bases
GGAGCAGAACACATGCGAATGACCCAAGGCTGTTTCTCTTACCTGCCGGACCTCACCGACGAGCAGATCTCGGCGCAAGT
GCAATACGCGCTCGGCAAGG

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit 2 [H]

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MNESVTVRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEASAAVAGESSTATWTVVWTDRLTAAEK
YRAKCYRVDPVPNSPGQYFAYIAYDLDLFENGSIANLSASIIGNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVER
ERMDKFGRPLLGATVKPKLGLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAASGEIKGTY
LNVTAGTMEEMYERAEFAKQLGSVIIMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHSTYTRQRNHGVSFRVIAKWMRL
AGVDHIHAGTVVGKLEGDPATTKGYYDICREDYNPANLEHGLFFDQHWASLNKLMPVASGGIHAGQMHQLLDLLGEDVVL
QFGGGTIGHPMGIAAGATANRVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKAALDTWKNVSFNYESTDTPDYAPT
PSVSV

Sequences:

>Translated_485_residues
MNESVTVRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEASAAVAGESSTATWTVVWTDRLTAAEK
YRAKCYRVDPVPNSPGQYFAYIAYDLDLFENGSIANLSASIIGNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVER
ERMDKFGRPLLGATVKPKLGLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAASGEIKGTY
LNVTAGTMEEMYERAEFAKQLGSVIIMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHSTYTRQRNHGVSFRVIAKWMRL
AGVDHIHAGTVVGKLEGDPATTKGYYDICREDYNPANLEHGLFFDQHWASLNKLMPVASGGIHAGQMHQLLDLLGEDVVL
QFGGGTIGHPMGIAAGATANRVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKAALDTWKNVSFNYESTDTPDYAPT
PSVSV
>Mature_485_residues
MNESVTVRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEASAAVAGESSTATWTVVWTDRLTAAEK
YRAKCYRVDPVPNSPGQYFAYIAYDLDLFENGSIANLSASIIGNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVER
ERMDKFGRPLLGATVKPKLGLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAASGEIKGTY
LNVTAGTMEEMYERAEFAKQLGSVIIMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHSTYTRQRNHGVSFRVIAKWMRL
AGVDHIHAGTVVGKLEGDPATTKGYYDICREDYNPANLEHGLFFDQHWASLNKLMPVASGGIHAGQMHQLLDLLGEDVVL
QFGGGTIGHPMGIAAGATANRVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKAALDTWKNVSFNYESTDTPDYAPT
PSVSV

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 53714; Mature: 53714

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESVTVRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEASAAVAG
CCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCC
ESSTATWTVVWTDRLTAAEKYRAKCYRVDPVPNSPGQYFAYIAYDLDLFENGSIANLSAS
CCCCEEEEEEEECCHHHHHHHHCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCHHHH
IIGNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVERERMDKFGRPLLGATVKPKLG
HHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCC
LSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAASGEIKGTY
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LNVTAGTMEEMYERAEFAKQLGSVIIMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHST
EEEEHHHHHHHHHHHHHHHHHCHHEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
YTRQRNHGVSFRVIAKWMRLAGVDHIHAGTVVGKLEGDPATTKGYYDICREDYNPANLEH
HHHHHCCCCHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCC
GLFFDQHWASLNKLMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIAAGATAN
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHH
RVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKAALDTWKNVSFNYESTDTPDYAPT
HHHHHHEEEECCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCC
PSVSV
CCCCC
>Mature Secondary Structure
MNESVTVRGKDRYKSGVMEYKKMGYWEPDYEPKDTDVIALFRVTPQDGVDPIEASAAVAG
CCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCC
ESSTATWTVVWTDRLTAAEKYRAKCYRVDPVPNSPGQYFAYIAYDLDLFENGSIANLSAS
CCCCEEEEEEEECCHHHHHHHHCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCHHHH
IIGNVFGFKPLKALRLEDMRLPVAYVKTFQGPATGIVVERERMDKFGRPLLGATVKPKLG
HHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCCC
LSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRERFLYCMEAVNKAQAASGEIKGTY
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LNVTAGTMEEMYERAEFAKQLGSVIIMIDLVIGYTAIQSMAKWARKNDMILHLHRAGHST
EEEEHHHHHHHHHHHHHHHHHCHHEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCH
YTRQRNHGVSFRVIAKWMRLAGVDHIHAGTVVGKLEGDPATTKGYYDICREDYNPANLEH
HHHHHCCCCHHHHHHHHHHHHCCCCEECCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCC
GLFFDQHWASLNKLMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIAAGATAN
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHH
RVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKAALDTWKNVSFNYESTDTPDYAPT
HHHHHHEEEECCCCCHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCCCCCCCCC
PSVSV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA