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The map label for this gene is 86750838

Identifier: 86750838

GI number: 86750838

Start: 4264838

End: 4265239

Strand: Reverse

Name: 86750838

Synonym: RPB_3729

Alternate gene names: NA

Gene position: 4265239-4264838 (Counterclockwise)

Preceding gene: 86750839

Following gene: 86750837

Centisome position: 80.0

GC content: 65.67

Gene sequence:

>402_bases
GTGACGCGCTACCTGCTGGACACCAACATCCTTTCCGATCTGATCCGGAATCCGCAGGGCGCGGCCGCGCGCCGCATCGC
CAAGGTCGGCGAAGCCGGCGTCTGCACCAGCATCATCGTTGCGTCCGAGCTGCGCTATGGCTGCGCCAAGAGTGGGTCGG
CCAAGCTGAGCAAGGCAGTCGGCGATCTGCTCGGCGAGATCGACGTGTTGCCGTTCGAGGCGCCGGCCGACGCCGAATAT
GGTGCCATCCGTTCGGCGCTGGAGTCCGCCGGGACGCCGATCGGCAGCAACGATCTGCTGATCGCCGCCCACGCGAAATC
GCTGGGCGCGATCATGGTCACGGCCAATACGCAGGAATTCAAGCGCGTCCGGGGATTGAAGGTCGAGAACTGGCTGGCGT
GA

Upstream 100 bases:

>100_bases
TGCGTAAACGCGGTCTGATCGCCTTGTTGGCATCGATGCCCCCGCTCGACGAGGCGTTTCCGGAGATTGACGATCCGGCG
CCGGCGCCGGAGAAAATCCT

Downstream 100 bases:

>100_bases
TGCAGGACGGCCGACGACAGGATCCGTCCCTTTATTTTTGGCTCCGATCAGGTTTCGCAACAGCGCGGTTAGTCCCCGAT
TGACTTGCGCCCCGGCGCGC

Product: PilT protein-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTRYLLDTNILSDLIRNPQGAAARRIAKVGEAGVCTSIIVASELRYGCAKSGSAKLSKAVGDLLGEIDVLPFEAPADAEY
GAIRSALESAGTPIGSNDLLIAAHAKSLGAIMVTANTQEFKRVRGLKVENWLA

Sequences:

>Translated_133_residues
MTRYLLDTNILSDLIRNPQGAAARRIAKVGEAGVCTSIIVASELRYGCAKSGSAKLSKAVGDLLGEIDVLPFEAPADAEY
GAIRSALESAGTPIGSNDLLIAAHAKSLGAIMVTANTQEFKRVRGLKVENWLA
>Mature_132_residues
TRYLLDTNILSDLIRNPQGAAARRIAKVGEAGVCTSIIVASELRYGCAKSGSAKLSKAVGDLLGEIDVLPFEAPADAEYG
AIRSALESAGTPIGSNDLLIAAHAKSLGAIMVTANTQEFKRVRGLKVENWLA

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 13956; Mature: 13825

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYLLDTNILSDLIRNPQGAAARRIAKVGEAGVCTSIIVASELRYGCAKSGSAKLSKAV
CCCEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
GDLLGEIDVLPFEAPADAEYGAIRSALESAGTPIGSNDLLIAAHAKSLGAIMVTANTQEF
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECHHHH
KRVRGLKVENWLA
HHHHCCCCHHCCC
>Mature Secondary Structure 
TRYLLDTNILSDLIRNPQGAAARRIAKVGEAGVCTSIIVASELRYGCAKSGSAKLSKAV
CCEEHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
GDLLGEIDVLPFEAPADAEYGAIRSALESAGTPIGSNDLLIAAHAKSLGAIMVTANTQEF
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEECHHHH
KRVRGLKVENWLA
HHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]