Click here to switch to the map view.

The map label for this gene is 86750421

Identifier: 86750421

GI number: 86750421

Start: 3783626

End: 3784102

Strand: Direct

Name: 86750421

Synonym: RPB_3310

Alternate gene names: NA

Gene position: 3783626-3784102 (Clockwise)

Preceding gene: 86750420

Following gene: 86750422

Centisome position: 70.97

GC content: 59.96

Gene sequence:

>477_bases
TTGGGTGCCGGGGCTGTGAGTCAGATGACGAAGGAAGATGACGTGAATAACGATGCTCCCCCCGCACCCGCGCGACAAGG
CTATACGGATCGCCCGAAGCGTTACCGCCTTCGCACGCGGCGTGGCTGGGAAATCTACCTTCCGCCGACCGGTGAACCGG
TCCCGTTTGCTGTTGAGCATCGCGGCGAAATTTGCCTCGTACATAGCGTCGTCAGCGACGCGCAATACTTCGCCAAGTAT
CCGGAAGCGCGGTATCGCTTCACGGTGCGCATTGACAACGAGGCGATGGATTGGACTTTCGTGACGCGCCAGGGCGGCAC
GATCAGTGGCGATCGATACGATCTCTTCTGTCGGTTGCAACACGACAGACACGGCACGGTTGAGGCTCGGCTGAAGCGCG
TCTTGTTGCGCTACGCGACTATCGAAACCCATATGGTGAGACGGGACGCGCCCGATCTTATCAGCGCGCTGCAGTGA

Upstream 100 bases:

>100_bases
GCAGTTGAACTCCAATTGCTGAGGGGAGATCGGAATGGGCTGTTAGACCCGGTGTCCGGCTCCGAAACTTCCCAACAAAA
CTCAAAAAGAAGCCCCGGCA

Downstream 100 bases:

>100_bases
CATGCTCGCCATCAGGGATGTCTTCGATCGGCTAATCGCTAACGGCTGCAGCCCGCTTCCGATCGGACCGCGCAGCGCGG
ACCCGCGCGGTCCGCAGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MGAGAVSQMTKEDDVNNDAPPAPARQGYTDRPKRYRLRTRRGWEIYLPPTGEPVPFAVEHRGEICLVHSVVSDAQYFAKY
PEARYRFTVRIDNEAMDWTFVTRQGGTISGDRYDLFCRLQHDRHGTVEARLKRVLLRYATIETHMVRRDAPDLISALQ

Sequences:

>Translated_158_residues
MGAGAVSQMTKEDDVNNDAPPAPARQGYTDRPKRYRLRTRRGWEIYLPPTGEPVPFAVEHRGEICLVHSVVSDAQYFAKY
PEARYRFTVRIDNEAMDWTFVTRQGGTISGDRYDLFCRLQHDRHGTVEARLKRVLLRYATIETHMVRRDAPDLISALQ
>Mature_157_residues
GAGAVSQMTKEDDVNNDAPPAPARQGYTDRPKRYRLRTRRGWEIYLPPTGEPVPFAVEHRGEICLVHSVVSDAQYFAKYP
EARYRFTVRIDNEAMDWTFVTRQGGTISGDRYDLFCRLQHDRHGTVEARLKRVLLRYATIETHMVRRDAPDLISALQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18224; Mature: 18093

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAGAVSQMTKEDDVNNDAPPAPARQGYTDRPKRYRLRTRRGWEIYLPPTGEPVPFAVEH
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCEEEECCCCCCCCEEECC
RGEICLVHSVVSDAQYFAKYPEARYRFTVRIDNEAMDWTFVTRQGGTISGDRYDLFCRLQ
CCCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCEECCCCEEEEEEEE
HDRHGTVEARLKRVLLRYATIETHMVRRDAPDLISALQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure 
GAGAVSQMTKEDDVNNDAPPAPARQGYTDRPKRYRLRTRRGWEIYLPPTGEPVPFAVEH
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCEEEECCCCCCCCEEECC
RGEICLVHSVVSDAQYFAKYPEARYRFTVRIDNEAMDWTFVTRQGGTISGDRYDLFCRLQ
CCCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCEECCCCEEEEEEEE
HDRHGTVEARLKRVLLRYATIETHMVRRDAPDLISALQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA