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The map label for this gene is tex [H]

Identifier: 86750388

GI number: 86750388

Start: 3749252

End: 3751651

Strand: Direct

Name: tex [H]

Synonym: RPB_3277

Alternate gene names: 86750388

Gene position: 3749252-3751651 (Clockwise)

Preceding gene: 86750384

Following gene: 86750390

Centisome position: 70.32

GC content: 66.54

Gene sequence:

>2400_bases
GTGCCATCGATTCGCCGCTCAGCCGGCGCTTCATCGACACACCGTGCCCATTGTTTCGAGAGACCTCCAGTGCCGAAAAT
CGCGTCCATCATCGCCGCCGAACTCGCCGTCCGTGAAGAACAGGTCCAGGCCGCCATCGACCTGCTCGACGGCGGGTCGA
CCGTTCCGTTCATCGCGCGCTATCGCAAGGAAGCGACCGGGATGCTGGACGACGTGCAGTTGCGCGCGCTGGAAGAGCGG
CTCGGCTATCTGCGCGAGATGGACGCGCGCCGGATCGCGATCATCGACAGCATCAAGCAGCAGGGCAAGCTGACGCCCGA
GATCGAGAAGGCGCTGCTCGCGGCCGACACCAAGGCCCGGCTCGAGGACATCTATCTGCCGTTCAAGGAAAAGCGCCGGA
CCAAGGCGCAGATTGCGCGCGAGGCCGGGCTCGAGCCGCTGGCCGAGATGCTGCTGACGAATCCCGACAAGCATCCCGAG
ACCGAGGCGGCGGCCTTCGTGAAGACCGACGGCGAGCATCCGGTCGCCGACGTCAAGGCGGCGCTGGAAGGCGCGCGCGC
CATTCTGGTCGAACGCTTCTCCGAACACGCCGACCTCACCGGCAGCCTGCGCGAAGCGATCTGGAGCCGCGGCCAGCTCA
AGGCGAGCGTTCGCACCGGCAAGAAAACCGAAGGCGCGAAATTCGCCGACTATTTCGACTTTTCCGAGCCTTACCAGAAG
CTGCCGTCGCATCGCATTCTCGCGTTGCTACGTGGCGAGAAAGAGGAAATCCTGACGCTTGATTTCGGCGACGGCGAGGA
TCCCGACTCCAAGGAGCCGACGCAATACGAAAACCGCATCGCGGCGACCTTCGGCATCGCGCGCAAGGGACGCCCCGGCG
ACGCCTTCCTGTCGGATTGCGTGCGCTGGGCCTGGCGCACCCGGATCAAGACCGGGCTCGCGCTCGATACACGGATGCGC
CTCTGGCAGCAGGCCGAGAAGGAAGCGGTGCGCGTGTTCGCCGCCAATCTGCGCGACCTGCTGCTCGCCGCGCCCGCCGG
AGGCCGCGCGACGCTCGGCCTCGATCCCGGCTTCCGCACCGGCGTCAAGGTCGCGGTGATCGACCAGACCGGCAAGTTCG
TCGACCACACCACGATCTATCCGCACGAGCCGGCGCGGAAGTGGAACGAGAGCATGCTCGAGCTGGCGCAGCTCTGCATC
AAGCATCGCATCGAGCTGGTCGCGATCGGCAACGGTACCGCGTCGCGCGAAACCGAAAAGCTCGTCACCGACCTGATGAA
GCTGAAGCCCGAGCTGAAACTCACCAAGGCGATCGTCTCCGAGGCCGGCGCCTCGGTGTATTCGGCCTCCGAATTCGCCT
CCAAGGAATTCCCGGATCTCGACGTCTCGATCCGCGGCGCGGTCTCGATCGCGCGGCGGCTGCAGGACCCGCTCGGCGAA
CTGGTGAAGGTGCCGCCGCAATCGATCGGCGTCGGCCAGTATCAGCACGACCTCAACCAGCATGTGCTGTCGCGCGCGCT
CGACGCCACCGTCGAGGATTGCGTCAACGCCGTCGGCGTCGATCTCAACACCGCATCGGCGCCGCTGCTGGAGCGCGTCT
CCGGCATCGGCGAAACGCTGGCGGCGAACATCGTCGCCCACCGCGACGGCAACGGCCCCTTCCCGAGCCGCGCCAAGCTC
AAGGAAGTGCCGCGGCTCGGCCCCAAGGCGTTCGAGCAATGCGCCGGCTTCCTGCGGATTCGCGACGGCGAGAATCCGCT
CGACGCCTCCGGCGTGCATCCGGAAGCCTACCCGCTGGTGAAGAAGATTCTGGCGGCGACCAAGAGCGACATCAAGGCGA
TCATCGGCCAGACCAAGACGCTGCAGTCGCTGCAGCCCGCGTCCTTCGCGGACGACAAATTCGGCATCCCCACGGTGACC
GACATCCTGAAGGAATTGGAGAAGCCCGGCCGCGATCCGCGGCCGGAATTCAAGACCGCGACGTTCCAGGAGGGCGTCGA
GAAGATCACCGACCTCAAGCCCGGCATGATCCTCGAGGCGACGGTGACCAACGTCGCCGCGTTCGGTGCCTTCGCCGACA
TCGGCGTGCATCAGGACGGGCTGATCCACATCTCGGCGATGTCGGAACGGCGGATCAACGACCCGCGCGAAGTCGTCAAG
CCGGGCCAGGTGGTGAAGGTGAAGGTGCTCGAGGTCGACGTGCCGCGCAACCGGATCGGGCTGACGCTGCGGCTGTCGGA
TCCCATTCCGGCGCCCGGCGAGCGACGCAAGGACGGCGGCGGCAACGCCAAGCTGGTCGATCGCTATCGCCCCAAGCCCG
AGCCGAAGAGCACCGGCGGCGGCGCCTTCGCGGCCGCGCTGGCAAAGGCGGCCGAGAACAGCAAGGGCCGCTCGAAGTAA

Upstream 100 bases:

>100_bases
CGAGCTGCGTCTCCCGGAACCGTGCCCGCAGGTCGAGGCTCGCAAAACGGCTGTGGGCCACCGCGACGCGCCGTCCCCCT
CGCTGCCGGGATGTCGTACG

Downstream 100 bases:

>100_bases
GCGGGAGCCGCCCCCCTTCGGCGGGCCCGCTCCCGCCTGGGTGGCGCCGTGCCTCCGGCAGGATCGCCGGAGGCACGAGG
ACGCAAGCTGTTACTTGATG

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 799; Mature: 798

Protein sequence:

>799_residues
MPSIRRSAGASSTHRAHCFERPPVPKIASIIAAELAVREEQVQAAIDLLDGGSTVPFIARYRKEATGMLDDVQLRALEER
LGYLREMDARRIAIIDSIKQQGKLTPEIEKALLAADTKARLEDIYLPFKEKRRTKAQIAREAGLEPLAEMLLTNPDKHPE
TEAAAFVKTDGEHPVADVKAALEGARAILVERFSEHADLTGSLREAIWSRGQLKASVRTGKKTEGAKFADYFDFSEPYQK
LPSHRILALLRGEKEEILTLDFGDGEDPDSKEPTQYENRIAATFGIARKGRPGDAFLSDCVRWAWRTRIKTGLALDTRMR
LWQQAEKEAVRVFAANLRDLLLAAPAGGRATLGLDPGFRTGVKVAVIDQTGKFVDHTTIYPHEPARKWNESMLELAQLCI
KHRIELVAIGNGTASRETEKLVTDLMKLKPELKLTKAIVSEAGASVYSASEFASKEFPDLDVSIRGAVSIARRLQDPLGE
LVKVPPQSIGVGQYQHDLNQHVLSRALDATVEDCVNAVGVDLNTASAPLLERVSGIGETLAANIVAHRDGNGPFPSRAKL
KEVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLVKKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVT
DILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVK
PGQVVKVKVLEVDVPRNRIGLTLRLSDPIPAPGERRKDGGGNAKLVDRYRPKPEPKSTGGGAFAAALAKAAENSKGRSK

Sequences:

>Translated_799_residues
MPSIRRSAGASSTHRAHCFERPPVPKIASIIAAELAVREEQVQAAIDLLDGGSTVPFIARYRKEATGMLDDVQLRALEER
LGYLREMDARRIAIIDSIKQQGKLTPEIEKALLAADTKARLEDIYLPFKEKRRTKAQIAREAGLEPLAEMLLTNPDKHPE
TEAAAFVKTDGEHPVADVKAALEGARAILVERFSEHADLTGSLREAIWSRGQLKASVRTGKKTEGAKFADYFDFSEPYQK
LPSHRILALLRGEKEEILTLDFGDGEDPDSKEPTQYENRIAATFGIARKGRPGDAFLSDCVRWAWRTRIKTGLALDTRMR
LWQQAEKEAVRVFAANLRDLLLAAPAGGRATLGLDPGFRTGVKVAVIDQTGKFVDHTTIYPHEPARKWNESMLELAQLCI
KHRIELVAIGNGTASRETEKLVTDLMKLKPELKLTKAIVSEAGASVYSASEFASKEFPDLDVSIRGAVSIARRLQDPLGE
LVKVPPQSIGVGQYQHDLNQHVLSRALDATVEDCVNAVGVDLNTASAPLLERVSGIGETLAANIVAHRDGNGPFPSRAKL
KEVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLVKKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVT
DILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVK
PGQVVKVKVLEVDVPRNRIGLTLRLSDPIPAPGERRKDGGGNAKLVDRYRPKPEPKSTGGGAFAAALAKAAENSKGRSK
>Mature_798_residues
PSIRRSAGASSTHRAHCFERPPVPKIASIIAAELAVREEQVQAAIDLLDGGSTVPFIARYRKEATGMLDDVQLRALEERL
GYLREMDARRIAIIDSIKQQGKLTPEIEKALLAADTKARLEDIYLPFKEKRRTKAQIAREAGLEPLAEMLLTNPDKHPET
EAAAFVKTDGEHPVADVKAALEGARAILVERFSEHADLTGSLREAIWSRGQLKASVRTGKKTEGAKFADYFDFSEPYQKL
PSHRILALLRGEKEEILTLDFGDGEDPDSKEPTQYENRIAATFGIARKGRPGDAFLSDCVRWAWRTRIKTGLALDTRMRL
WQQAEKEAVRVFAANLRDLLLAAPAGGRATLGLDPGFRTGVKVAVIDQTGKFVDHTTIYPHEPARKWNESMLELAQLCIK
HRIELVAIGNGTASRETEKLVTDLMKLKPELKLTKAIVSEAGASVYSASEFASKEFPDLDVSIRGAVSIARRLQDPLGEL
VKVPPQSIGVGQYQHDLNQHVLSRALDATVEDCVNAVGVDLNTASAPLLERVSGIGETLAANIVAHRDGNGPFPSRAKLK
EVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLVKKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVTD
ILKELEKPGRDPRPEFKTATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVKP
GQVVKVKVLEVDVPRNRIGLTLRLSDPIPAPGERRKDGGGNAKLVDRYRPKPEPKSTGGGAFAAALAKAAENSKGRSK

Specific function: Transcription accessory protein. Exact function not known [H]

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=778, Percent_Identity=32.9048843187661, Blast_Score=376, Evalue=1e-104,
Organism=Homo sapiens, GI27597090, Length=773, Percent_Identity=22.509702457956, Blast_Score=116, Evalue=1e-25,
Organism=Escherichia coli, GI87082262, Length=750, Percent_Identity=58.2666666666667, Blast_Score=848, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17511129, Length=746, Percent_Identity=29.3565683646113, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17552892, Length=282, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321552, Length=186, Percent_Identity=29.5698924731183, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI62484314, Length=781, Percent_Identity=31.2419974391805, Blast_Score=362, Evalue=1e-100,
Organism=Drosophila melanogaster, GI24640080, Length=707, Percent_Identity=20.6506364922206, Blast_Score=96, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 87258; Mature: 87127

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIRRSAGASSTHRAHCFERPPVPKIASIIAAELAVREEQVQAAIDLLDGGSTVPFIAR
CCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
YRKEATGMLDDVQLRALEERLGYLREMDARRIAIIDSIKQQGKLTPEIEKALLAADTKAR
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH
LEDIYLPFKEKRRTKAQIAREAGLEPLAEMLLTNPDKHPETEAAAFVKTDGEHPVADVKA
HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCHHHHHH
ALEGARAILVERFSEHADLTGSLREAIWSRGQLKASVRTGKKTEGAKFADYFDFSEPYQK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHCCCCCCCCCHHHHCCCCHHHHH
LPSHRILALLRGEKEEILTLDFGDGEDPDSKEPTQYENRIAATFGIARKGRPGDAFLSDC
CCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
VRWAWRTRIKTGLALDTRMRLWQQAEKEAVRVFAANLRDLLLAAPAGGRATLGLDPGFRT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCC
GVKVAVIDQTGKFVDHTTIYPHEPARKWNESMLELAQLCIKHRIELVAIGNGTASRETEK
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
LVTDLMKLKPELKLTKAIVSEAGASVYSASEFASKEFPDLDVSIRGAVSIARRLQDPLGE
HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHH
LVKVPPQSIGVGQYQHDLNQHVLSRALDATVEDCVNAVGVDLNTASAPLLERVSGIGETL
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AANIVAHRDGNGPFPSRAKLKEVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLV
HHHHHEECCCCCCCCCCHHHHHCCCCCHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHH
KKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVTDILKELEKPGRDPRPEFKTA
HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH
TFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVK
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHCCCCCHHHHC
PGQVVKVKVLEVDVPRNRIGLTLRLSDPIPAPGERRKDGGGNAKLVDRYRPKPEPKSTGG
CCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCC
GAFAAALAKAAENSKGRSK
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSIRRSAGASSTHRAHCFERPPVPKIASIIAAELAVREEQVQAAIDLLDGGSTVPFIAR
CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
YRKEATGMLDDVQLRALEERLGYLREMDARRIAIIDSIKQQGKLTPEIEKALLAADTKAR
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHH
LEDIYLPFKEKRRTKAQIAREAGLEPLAEMLLTNPDKHPETEAAAFVKTDGEHPVADVKA
HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCHHHHHH
ALEGARAILVERFSEHADLTGSLREAIWSRGQLKASVRTGKKTEGAKFADYFDFSEPYQK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHHHCCCCCCCCCHHHHCCCCHHHHH
LPSHRILALLRGEKEEILTLDFGDGEDPDSKEPTQYENRIAATFGIARKGRPGDAFLSDC
CCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
VRWAWRTRIKTGLALDTRMRLWQQAEKEAVRVFAANLRDLLLAAPAGGRATLGLDPGFRT
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEECCCCCCCC
GVKVAVIDQTGKFVDHTTIYPHEPARKWNESMLELAQLCIKHRIELVAIGNGTASRETEK
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
LVTDLMKLKPELKLTKAIVSEAGASVYSASEFASKEFPDLDVSIRGAVSIARRLQDPLGE
HHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHH
LVKVPPQSIGVGQYQHDLNQHVLSRALDATVEDCVNAVGVDLNTASAPLLERVSGIGETL
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AANIVAHRDGNGPFPSRAKLKEVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLV
HHHHHEECCCCCCCCCCHHHHHCCCCCHHHHHHHHCEEEEECCCCCCCCCCCCCHHHHHH
KKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVTDILKELEKPGRDPRPEFKTA
HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHH
TFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDGLIHISAMSERRINDPREVVK
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHCCCCCHHHHC
PGQVVKVKVLEVDVPRNRIGLTLRLSDPIPAPGERRKDGGGNAKLVDRYRPKPEPKSTGG
CCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEHHCCCCCCCCCCCCC
GAFAAALAKAAENSKGRSK
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8755871; 12910271 [H]