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The map label for this gene is vapI [H]

Identifier: 86750347

GI number: 86750347

Start: 3700806

End: 3701090

Strand: Direct

Name: vapI [H]

Synonym: RPB_3236

Alternate gene names: 86750347

Gene position: 3700806-3701090 (Clockwise)

Preceding gene: 86750346

Following gene: 86750348

Centisome position: 69.41

GC content: 67.37

Gene sequence:

>285_bases
ATGCCCCGGCTACGCACCCACCCCGGCGAAGTTCTGCGTGAGGAATATCTCATTCCCCTCGGCCTCTCCGCTCGCGCGCT
CGCCAAAGATCTCGGCGTCCCCGCCAATCGCCTGACCGAAATCATGCGCGGCAGCCGAGACGTCAGCGCCGACACCGCGC
TCCGGCTCGGTCGCTACTTCGGCACCGACCCGCGGTTCGGGCTCGACCTGCAGGCGGCGCATGATTTGTCCAAGGCCGAG
CAGTCGACCGATTACAACAGCATCGTGCCGCGCGCGGTGGCCTAG

Upstream 100 bases:

>100_bases
GGGGTTATGGATTCCGGGCTCGCGCGCCGAAATGGCACGCGCTCCGGAATGACGGGGCTCGATGGATCATATATGATCTG
CATCGATTTGGGAGACCATC

Downstream 100 bases:

>100_bases
ACGACGGACGCTCACGCGATAACCGCAGCAACGAGATCACCAATGCCCCAGCTCCCACCCCATCTCGCGCAGCTCGAAAA
CGAACTCGCCGATATCGGCG

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MPRLRTHPGEVLREEYLIPLGLSARALAKDLGVPANRLTEIMRGSRDVSADTALRLGRYFGTDPRFGLDLQAAHDLSKAE
QSTDYNSIVPRAVA

Sequences:

>Translated_94_residues
MPRLRTHPGEVLREEYLIPLGLSARALAKDLGVPANRLTEIMRGSRDVSADTALRLGRYFGTDPRFGLDLQAAHDLSKAE
QSTDYNSIVPRAVA
>Mature_93_residues
PRLRTHPGEVLREEYLIPLGLSARALAKDLGVPANRLTEIMRGSRDVSADTALRLGRYFGTDPRFGLDLQAAHDLSKAEQ
STDYNSIVPRAVA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 10347; Mature: 10216

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLRTHPGEVLREEYLIPLGLSARALAKDLGVPANRLTEIMRGSRDVSADTALRLGRYF
CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHC
GTDPRFGLDLQAAHDLSKAEQSTDYNSIVPRAVA
CCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCC
>Mature Secondary Structure 
PRLRTHPGEVLREEYLIPLGLSARALAKDLGVPANRLTEIMRGSRDVSADTALRLGRYF
CCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHC
GTDPRFGLDLQAAHDLSKAEQSTDYNSIVPRAVA
CCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]