| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86750174
Identifier: 86750174
GI number: 86750174
Start: 3488722
End: 3490347
Strand: Direct
Name: 86750174
Synonym: RPB_3058
Alternate gene names: NA
Gene position: 3488722-3490347 (Clockwise)
Preceding gene: 86750168
Following gene: 86750175
Centisome position: 65.43
GC content: 57.69
Gene sequence:
>1626_bases ATGCCAGAAGTTGTTCCTCTAAAGGCGAATCCATCCGTGGCTGCTCCAAATGAAAAGCTGGAGAAGTCGCTATCCGCTCT CAAAAAGCTGACGAGCGACGGGGCCCGACGCGTTTTTAAGACGGCGGAGATCGGACGCACGGACCGTGAGCGGCTTGTGA AAAACGGGTTCCTCAAAGAGGTCATGAACGGCTGGCTGATGTTGGCCCGCACCGGCGACAGCACATCTTGGTACTCGTCT TACTGGGAGTTTTGCAGAAGCTACCTCGACGAGCGTTTTGGGGATGATTGGGTACTCTCCCCCGAGAGCACCATCCCCTT GTTGGCCGGCAACACGAACGTTCCGGCTCAGATCGTCGTTCAGGCCCCAAACGCAAACAATCTTGCGGTCAAACTTCCGC ACGACACCTCCATTTTTGCCTACAAAACCAAGATCCCGACAGCTGCTCCGGCAGCCTTCGCGGGCATGCGCGTCTATCCG ACCGTGGAAGCTATATGCAACGCCGCCCCAAACTTCTGGAGCACCAACAAAACGGATATGGTAGCCCTGCTTGGCTCAAT TCGGGACCGCTCGTCTATCCTCAAAGTTCTGCTCGGGAGTGGAAAGACCACTGCAGCCGGCAGGATTGCAGGCGCGTATC GCCAGTTAGGTAAGCCTGCGATCGCGGACGAGATCGTCGCCACCATGAAAAGTGCCGACTACCAGGTTCGCGAAGAAGCG GATCCCTTCCGGGGCGTTGTCGAAATCACTCTGGGCGCTGGCAAACCCGTCGCACCAGTCGTGACGCGTGTGCGCCTGAT GTGGGCTCAAATGCGGGATGCAGTTCTCGCCGTTTTCACTGCCGAACCCAGCAAGGTCGACGACATCGACGCCTATATCG ATGCGGTCAACGAACGCTACACGTCGGACGCATACCATTCGCTATCCATCGAAGGATATTCGGTCAGCGAAGAGCTCATC GAGAGAGTCAAAAAGGGCCAATGGAGCCCTGAGACAAACGAAGGTGACAAGAAGCAGACCGACGCGATGGCGGCCAAAGG ATATCAGTTGGCATTCGACGAGGCCGTCAAATCGGTTCGGCGGGTGCTCGAGGGTGCGGATGCGGCAACGGTCGCCGAAG AAGATCACCTCAAATGGTTTCGTGCGCTGTTCCAACCGTCCATCGCCGCGGGTCTCCTCAAAGCAGAGCGTCTTTCTGGT TACCGGCAACATTTCATATTCATCAAGAATTCCGGACACTCGCCGACAGCCTGGGAATCCTTGCCCGATGCGATGGAGAC GTTCTTTGAATGCATCAGAGAGGAAAAGGACCCACGGGTTCGTGCCGTTCTCGGGCATTTCTTGTTCACGTTCATCCACC CTCTCCCAGACGGCAACGGCCGCTCGGGACGCTTCCTGATGAACGTCATGCTTGCGGAAGGCGGATATCCCTGGACGATC ATTCCCGTCGATCGGCGCAACGAGTACATGCAGGCCCTAGAGAAAGCGAGCGTTCAAGGCGACATCACGCCGTTCGCGCA ATTCGTGGCCGACTGCGCGCGGCTCGAGCCTCCACCACCGCGGCGATTGAAGGCCGGTGAAGTCCAGGCAGAAATCCCAG AAGCCGCGGCAGCACCAAGCCCATGA
Upstream 100 bases:
>100_bases TGTCTTTACTCAGCCGAAAATAATTGCAATTTTACGGCCTAAAGAATTGCCCTCACTCGCACAAAATAATTGTTTCTTCA CTGCACAAAACAATTGCATC
Downstream 100 bases:
>100_bases CTCGCGCGGGCGCGCGATGCACACCATCGCCGTCATCCCGACGCACAGCAGCAGCACCATCATGGTGGTGCTGAGACGAC CACCGATCGAAGAAATGCTC
Product: filamentation induced by cAMP protein Fic
Products: NA
Alternate protein names: Fic-Domain-Containing Protein; Fic Family Protein; Filamentation Induced By Camp Protein Fic
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MPEVVPLKANPSVAAPNEKLEKSLSALKKLTSDGARRVFKTAEIGRTDRERLVKNGFLKEVMNGWLMLARTGDSTSWYSS YWEFCRSYLDERFGDDWVLSPESTIPLLAGNTNVPAQIVVQAPNANNLAVKLPHDTSIFAYKTKIPTAAPAAFAGMRVYP TVEAICNAAPNFWSTNKTDMVALLGSIRDRSSILKVLLGSGKTTAAGRIAGAYRQLGKPAIADEIVATMKSADYQVREEA DPFRGVVEITLGAGKPVAPVVTRVRLMWAQMRDAVLAVFTAEPSKVDDIDAYIDAVNERYTSDAYHSLSIEGYSVSEELI ERVKKGQWSPETNEGDKKQTDAMAAKGYQLAFDEAVKSVRRVLEGADAATVAEEDHLKWFRALFQPSIAAGLLKAERLSG YRQHFIFIKNSGHSPTAWESLPDAMETFFECIREEKDPRVRAVLGHFLFTFIHPLPDGNGRSGRFLMNVMLAEGGYPWTI IPVDRRNEYMQALEKASVQGDITPFAQFVADCARLEPPPPRRLKAGEVQAEIPEAAAAPSP
Sequences:
>Translated_541_residues MPEVVPLKANPSVAAPNEKLEKSLSALKKLTSDGARRVFKTAEIGRTDRERLVKNGFLKEVMNGWLMLARTGDSTSWYSS YWEFCRSYLDERFGDDWVLSPESTIPLLAGNTNVPAQIVVQAPNANNLAVKLPHDTSIFAYKTKIPTAAPAAFAGMRVYP TVEAICNAAPNFWSTNKTDMVALLGSIRDRSSILKVLLGSGKTTAAGRIAGAYRQLGKPAIADEIVATMKSADYQVREEA DPFRGVVEITLGAGKPVAPVVTRVRLMWAQMRDAVLAVFTAEPSKVDDIDAYIDAVNERYTSDAYHSLSIEGYSVSEELI ERVKKGQWSPETNEGDKKQTDAMAAKGYQLAFDEAVKSVRRVLEGADAATVAEEDHLKWFRALFQPSIAAGLLKAERLSG YRQHFIFIKNSGHSPTAWESLPDAMETFFECIREEKDPRVRAVLGHFLFTFIHPLPDGNGRSGRFLMNVMLAEGGYPWTI IPVDRRNEYMQALEKASVQGDITPFAQFVADCARLEPPPPRRLKAGEVQAEIPEAAAAPSP >Mature_540_residues PEVVPLKANPSVAAPNEKLEKSLSALKKLTSDGARRVFKTAEIGRTDRERLVKNGFLKEVMNGWLMLARTGDSTSWYSSY WEFCRSYLDERFGDDWVLSPESTIPLLAGNTNVPAQIVVQAPNANNLAVKLPHDTSIFAYKTKIPTAAPAAFAGMRVYPT VEAICNAAPNFWSTNKTDMVALLGSIRDRSSILKVLLGSGKTTAAGRIAGAYRQLGKPAIADEIVATMKSADYQVREEAD PFRGVVEITLGAGKPVAPVVTRVRLMWAQMRDAVLAVFTAEPSKVDDIDAYIDAVNERYTSDAYHSLSIEGYSVSEELIE RVKKGQWSPETNEGDKKQTDAMAAKGYQLAFDEAVKSVRRVLEGADAATVAEEDHLKWFRALFQPSIAAGLLKAERLSGY RQHFIFIKNSGHSPTAWESLPDAMETFFECIREEKDPRVRAVLGHFLFTFIHPLPDGNGRSGRFLMNVMLAEGGYPWTII PVDRRNEYMQALEKASVQGDITPFAQFVADCARLEPPPPRRLKAGEVQAEIPEAAAAPSP
Specific function: Unknown
COG id: COG3177
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42794620, Length=226, Percent_Identity=26.5486725663717, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17544594, Length=221, Percent_Identity=24.8868778280543, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24582217, Length=222, Percent_Identity=28.8288288288288, Blast_Score=85, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59630; Mature: 59499
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVVPLKANPSVAAPNEKLEKSLSALKKLTSDGARRVFKTAEIGRTDRERLVKNGFLKE CCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VMNGWLMLARTGDSTSWYSSYWEFCRSYLDERFGDDWVLSPESTIPLLAGNTNVPAQIVV HHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCEEEEE QAPNANNLAVKLPHDTSIFAYKTKIPTAAPAAFAGMRVYPTVEAICNAAPNFWSTNKTDM ECCCCCCEEEECCCCCCEEEEECCCCCCCCHHHHCCEECHHHHHHHCCCCCCCCCCCHHH VALLGSIRDRSSILKVLLGSGKTTAAGRIAGAYRQLGKPAIADEIVATMKSADYQVREEA HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCC DPFRGVVEITLGAGKPVAPVVTRVRLMWAQMRDAVLAVFTAEPSKVDDIDAYIDAVNERY CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHH TSDAYHSLSIEGYSVSEELIERVKKGQWSPETNEGDKKQTDAMAAKGYQLAFDEAVKSVR CCCCHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH RVLEGADAATVAEEDHLKWFRALFQPSIAAGLLKAERLSGYRQHFIFIKNSGHSPTAWES HHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH LPDAMETFFECIREEKDPRVRAVLGHFLFTFIHPLPDGNGRSGRFLMNVMLAEGGYPWTI HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEHHHCCCCCEEE IPVDRRNEYMQALEKASVQGDITPFAQFVADCARLEPPPPRRLKAGEVQAEIPEAAAAPS EECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCC P C >Mature Secondary Structure PEVVPLKANPSVAAPNEKLEKSLSALKKLTSDGARRVFKTAEIGRTDRERLVKNGFLKE CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VMNGWLMLARTGDSTSWYSSYWEFCRSYLDERFGDDWVLSPESTIPLLAGNTNVPAQIVV HHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCEEEEE QAPNANNLAVKLPHDTSIFAYKTKIPTAAPAAFAGMRVYPTVEAICNAAPNFWSTNKTDM ECCCCCCEEEECCCCCCEEEEECCCCCCCCHHHHCCEECHHHHHHHCCCCCCCCCCCHHH VALLGSIRDRSSILKVLLGSGKTTAAGRIAGAYRQLGKPAIADEIVATMKSADYQVREEA HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCC DPFRGVVEITLGAGKPVAPVVTRVRLMWAQMRDAVLAVFTAEPSKVDDIDAYIDAVNERY CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHH TSDAYHSLSIEGYSVSEELIERVKKGQWSPETNEGDKKQTDAMAAKGYQLAFDEAVKSVR CCCCHHEEEECCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH RVLEGADAATVAEEDHLKWFRALFQPSIAAGLLKAERLSGYRQHFIFIKNSGHSPTAWES HHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHH LPDAMETFFECIREEKDPRVRAVLGHFLFTFIHPLPDGNGRSGRFLMNVMLAEGGYPWTI HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEHHHCCCCCEEE IPVDRRNEYMQALEKASVQGDITPFAQFVADCARLEPPPPRRLKAGEVQAEIPEAAAAPS EECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA