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The map label for this gene is ycjP [H]

Identifier: 86749667

GI number: 86749667

Start: 2923132

End: 2924046

Strand: Direct

Name: ycjP [H]

Synonym: RPB_2548

Alternate gene names: 86749667

Gene position: 2923132-2924046 (Clockwise)

Preceding gene: 86749666

Following gene: 86749668

Centisome position: 54.83

GC content: 61.2

Gene sequence:

>915_bases
ATGGCCTCGACACTGACGATCGACAAGGCCGCGCCACGGCGCAATCCGGGCTACGGCAGCATGAGCCGCGACCGCGCCTG
GGCGCTGAAATGGTCGTATTTCTTTCTGACGATCTTCGCGATTTTCTCGCTGGTGCCGCCGCTCTACATGCTGATCACCT
CGCTGAAGAGCAGCCAGGAGATCTCGGCGGCGACCAATCCGTGGTGGGTGTTCCACCCGACGCTCGGCAATTACATCCAG
TTGCTGACCTCGAACCAGTTCCTGACGTTCTTCTTCAATTCGGCGATGGTGTCGATCTTCGTCGTCACCATCACCATGCT
GATCAGCGTGCCGGCGGCGTTCGCGCTGGCGCGGATGCGGTTCTGGGGCTCGGCAACGCTCGCCACCGGCGTGTTCCTGA
CCTATCTGATCCCGGACACGTTGCTGTTCATTCCGCTGTTCAAGATGTTCGCCACGTTCGGCGACTGGAGCGGCATCCAG
TTGATCAACCGCTGGTACGTGCTGTTGATCATCTATCCGACCCTGACGGTGCCGTTCTGCACCTGGATCATGATCGGCTA
TTTCGCCTCGATCCCGAAGGAGCTGGACGAGGCTGCGATCATCGACGGCGCGTCGTGGTTCCAGACGCTGACGCGGATCT
TCATTCCGGTGGCGCTGCCCGGCATCATCGCCGCGACGATCTTCGCCTTCACCGTGTCCTGGGCGCAGTTCCTGTATCCC
CTGGTGTTCACCACCTCGACCGATCAGCTGGTGCTGCCGGTCGGCATCATCACCACGCTGATCAAGGGCGACGTGTTCAA
CTGGGGGCAGATCATGACCGGCGCGCTGCTCGGCGCCGCGCCGCCTTTGATCATCTACGCGTTTTTGATGGATTACTACA
TCGCGGGGCTCACCGCGGGCGCAACGAAAGGGTGA

Upstream 100 bases:

>100_bases
TTCCGCTCGGCGCCAGCGTGTCGCTGTTCATGCTGCCGATCCTCGGCGTCGCGGCGATCTTCATCTTGCGCGACATCAAC
AAACGCGGGAACGAAAGCTG

Downstream 100 bases:

>100_bases
CGCAATGGCCGAAGTGAACCTGCGCAAGGTGGTGAAGCGCTACGACGACGTCGAGGCCGTCCGCGGCATCGATCTCGACA
TTCCGGACAAGGAATTCGTG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MASTLTIDKAAPRRNPGYGSMSRDRAWALKWSYFFLTIFAIFSLVPPLYMLITSLKSSQEISAATNPWWVFHPTLGNYIQ
LLTSNQFLTFFFNSAMVSIFVVTITMLISVPAAFALARMRFWGSATLATGVFLTYLIPDTLLFIPLFKMFATFGDWSGIQ
LINRWYVLLIIYPTLTVPFCTWIMIGYFASIPKELDEAAIIDGASWFQTLTRIFIPVALPGIIAATIFAFTVSWAQFLYP
LVFTTSTDQLVLPVGIITTLIKGDVFNWGQIMTGALLGAAPPLIIYAFLMDYYIAGLTAGATKG

Sequences:

>Translated_304_residues
MASTLTIDKAAPRRNPGYGSMSRDRAWALKWSYFFLTIFAIFSLVPPLYMLITSLKSSQEISAATNPWWVFHPTLGNYIQ
LLTSNQFLTFFFNSAMVSIFVVTITMLISVPAAFALARMRFWGSATLATGVFLTYLIPDTLLFIPLFKMFATFGDWSGIQ
LINRWYVLLIIYPTLTVPFCTWIMIGYFASIPKELDEAAIIDGASWFQTLTRIFIPVALPGIIAATIFAFTVSWAQFLYP
LVFTTSTDQLVLPVGIITTLIKGDVFNWGQIMTGALLGAAPPLIIYAFLMDYYIAGLTAGATKG
>Mature_303_residues
ASTLTIDKAAPRRNPGYGSMSRDRAWALKWSYFFLTIFAIFSLVPPLYMLITSLKSSQEISAATNPWWVFHPTLGNYIQL
LTSNQFLTFFFNSAMVSIFVVTITMLISVPAAFALARMRFWGSATLATGVFLTYLIPDTLLFIPLFKMFATFGDWSGIQL
INRWYVLLIIYPTLTVPFCTWIMIGYFASIPKELDEAAIIDGASWFQTLTRIFIPVALPGIIAATIFAFTVSWAQFLYPL
VFTTSTDQLVLPVGIITTLIKGDVFNWGQIMTGALLGAAPPLIIYAFLMDYYIAGLTAGATKG

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=275, Percent_Identity=31.6363636363636, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=26.7281105990783, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789860, Length=216, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33863; Mature: 33732

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTLTIDKAAPRRNPGYGSMSRDRAWALKWSYFFLTIFAIFSLVPPLYMLITSLKSSQE
CCCCEECCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
ISAATNPWWVFHPTLGNYIQLLTSNQFLTFFFNSAMVSIFVVTITMLISVPAAFALARMR
HHCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWGSATLATGVFLTYLIPDTLLFIPLFKMFATFGDWSGIQLINRWYVLLIIYPTLTVPFC
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TWIMIGYFASIPKELDEAAIIDGASWFQTLTRIFIPVALPGIIAATIFAFTVSWAQFLYP
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVFTTSTDQLVLPVGIITTLIKGDVFNWGQIMTGALLGAAPPLIIYAFLMDYYIAGLTAG
HHHCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
ATKG
CCCC
>Mature Secondary Structure 
ASTLTIDKAAPRRNPGYGSMSRDRAWALKWSYFFLTIFAIFSLVPPLYMLITSLKSSQE
CCCEECCCCCCCCCCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH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CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]