Definition | Rhodopseudomonas palustris HaA2, complete genome. |
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Accession | NC_007778 |
Length | 5,331,656 |
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The map label for this gene is 86749665
Identifier: 86749665
GI number: 86749665
Start: 2920669
End: 2922054
Strand: Direct
Name: 86749665
Synonym: RPB_2546
Alternate gene names: NA
Gene position: 2920669-2922054 (Clockwise)
Preceding gene: 86749664
Following gene: 86749666
Centisome position: 54.78
GC content: 65.66
Gene sequence:
>1386_bases ATGTCGGATGATGCCGTGTCGCCCGCTGCAAGATCGCTCGCTGCCCAATCCCGGACCAAGCTCAGCCGCCGCCAGTTCGT CGCCGCTACCGCCATCACTTCGGCGGCGCTGGTCACCGCGCCCTACGTCCGCGGCGCCCACGCCGCCGGCAAACTGACGA TGGGGTTCTGGGACCATTGGGTTCCCGGCGCCAACAACACCTGCACCGAACTCGTCAAGCAATGGGGCGAGAAGGAGAAG GTCGAGGTCTCGATCGACTACATCCCGAGCCAGGGCAACAAGAACCTCTTGACCATCGCCGCCGAGGCGCAGGCCAAATC CGGTCACGACATCCTGTCGATGCCGACCTGGTGGCCGCACGCCAACGCCGAACTGATCGAGCCGGTCAACGACCTGATGG AAGACTTGATCAAGCAGAACGGCAAGGTCAACAACACCGTCGAATATCTCGCCAAGCGCGACGGCAAATGGCTCGCGGTG CCGTCCTGCATCGGCAGCCAGATCAAGGGGCCGTGCACCCGCATCGACCTATTGAAGAAGCACGCCAACATCGACATCCA GGCGATGTATCCGGCCGGCAGCCCGCCGAAGGACGACGACTGGACCATGGAGACGTTCCTGAAGGCGGCGGAAGCCTGCC ACAAGGCCGGCGTGCCGTTCGGCATCGGGCTCGGCGAGACCTCCGACAGCGTCGACAGCGCCGGCGCGTTCTTCCAGGCG TTCGGCGCGCAGCTCGTCGACGCCAAGGGCAACGTCACGGTGAAGACCGACGAGGTCCGCCAGGTGCTCGAATTCTACAA GAAGCTGATGGCGTTCCTGCCGGCCGACGTCACCGCCTGGGACGACTCCTCGAACAACAAATGGATCGTGTCCGGCCGCG GCGCGATGATCATGAACCCGCCGAGCGCCTGGGCGGTCGCCAAGCGCGACGCGCCGCAGGTCGCCGAGCAGCTCTGGACC CACGGCTTCCCGAAGGGGCCGAAGGGCCGCTACGCGCCGTTCCTGCCGTTCTTCTGGACCACCTGGACGTTCTCCAAGAA CAAGGAGGCGGCCAAGAGCCTGCTGCGGCATCTGTCGCAGCCGGACTCGATCGAGAAACTGGTGGCGGCGTCCGGCGGCT ACGACCTGCCGGCCTTCGCCAATTTGACCAAGCTCAAGGTCTGGGCGGACCAGGCACCGCCGACCGGGACGCTGTTCAGC TATCCCGATCCGTATCAGCGCCAGACGCTGTCGATCGCGGCGTCGCCGGCGCCGCCGAAGATCGCGCAGCAGATCTACGC CCAGGCGACGCTGACCAAGATGTGCGTGCGCCACTATCAGGGCGAGGCGATGGAGAAGACGCTCGCCTGGGCCGAAGGCG AGTGCGAGGGCTTCATGCGAAGCTGA
Upstream 100 bases:
>100_bases CGTCCGTGGCGCCAACGGCCAACAGAGCCGCGCCACCAAAACAAAGAGAGCGCTTCAAAGCCCCAGACCATCGCATTGGC TCACCAGGGAGGAATGCCAA
Downstream 100 bases:
>100_bases CGGCCGCAACAAGCCGCGACTCACGCAACGTCTAAGTTCGTCATTGCGAGCCGACGGCGAAGCAATCCAGAGCACCGACC GCTGCGCTGTTGGATTGCTT
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Sugar ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MSDDAVSPAARSLAAQSRTKLSRRQFVAATAITSAALVTAPYVRGAHAAGKLTMGFWDHWVPGANNTCTELVKQWGEKEK VEVSIDYIPSQGNKNLLTIAAEAQAKSGHDILSMPTWWPHANAELIEPVNDLMEDLIKQNGKVNNTVEYLAKRDGKWLAV PSCIGSQIKGPCTRIDLLKKHANIDIQAMYPAGSPPKDDDWTMETFLKAAEACHKAGVPFGIGLGETSDSVDSAGAFFQA FGAQLVDAKGNVTVKTDEVRQVLEFYKKLMAFLPADVTAWDDSSNNKWIVSGRGAMIMNPPSAWAVAKRDAPQVAEQLWT HGFPKGPKGRYAPFLPFFWTTWTFSKNKEAAKSLLRHLSQPDSIEKLVAASGGYDLPAFANLTKLKVWADQAPPTGTLFS YPDPYQRQTLSIAASPAPPKIAQQIYAQATLTKMCVRHYQGEAMEKTLAWAEGECEGFMRS
Sequences:
>Translated_461_residues MSDDAVSPAARSLAAQSRTKLSRRQFVAATAITSAALVTAPYVRGAHAAGKLTMGFWDHWVPGANNTCTELVKQWGEKEK VEVSIDYIPSQGNKNLLTIAAEAQAKSGHDILSMPTWWPHANAELIEPVNDLMEDLIKQNGKVNNTVEYLAKRDGKWLAV PSCIGSQIKGPCTRIDLLKKHANIDIQAMYPAGSPPKDDDWTMETFLKAAEACHKAGVPFGIGLGETSDSVDSAGAFFQA FGAQLVDAKGNVTVKTDEVRQVLEFYKKLMAFLPADVTAWDDSSNNKWIVSGRGAMIMNPPSAWAVAKRDAPQVAEQLWT HGFPKGPKGRYAPFLPFFWTTWTFSKNKEAAKSLLRHLSQPDSIEKLVAASGGYDLPAFANLTKLKVWADQAPPTGTLFS YPDPYQRQTLSIAASPAPPKIAQQIYAQATLTKMCVRHYQGEAMEKTLAWAEGECEGFMRS >Mature_460_residues SDDAVSPAARSLAAQSRTKLSRRQFVAATAITSAALVTAPYVRGAHAAGKLTMGFWDHWVPGANNTCTELVKQWGEKEKV EVSIDYIPSQGNKNLLTIAAEAQAKSGHDILSMPTWWPHANAELIEPVNDLMEDLIKQNGKVNNTVEYLAKRDGKWLAVP SCIGSQIKGPCTRIDLLKKHANIDIQAMYPAGSPPKDDDWTMETFLKAAEACHKAGVPFGIGLGETSDSVDSAGAFFQAF GAQLVDAKGNVTVKTDEVRQVLEFYKKLMAFLPADVTAWDDSSNNKWIVSGRGAMIMNPPSAWAVAKRDAPQVAEQLWTH GFPKGPKGRYAPFLPFFWTTWTFSKNKEAAKSLLRHLSQPDSIEKLVAASGGYDLPAFANLTKLKVWADQAPPTGTLFSY PDPYQRQTLSIAASPAPPKIAQQIYAQATLTKMCVRHYQGEAMEKTLAWAEGECEGFMRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50434; Mature: 50303
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDAVSPAARSLAAQSRTKLSRRQFVAATAITSAALVTAPYVRGAHAAGKLTMGFWDHW CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHC VPGANNTCTELVKQWGEKEKVEVSIDYIPSQGNKNLLTIAAEAQAKSGHDILSMPTWWPH CCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCC ANAELIEPVNDLMEDLIKQNGKVNNTVEYLAKRDGKWLAVPSCIGSQIKGPCTRIDLLKK CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECHHHCCCCCCCHHHHHHHHH HANIDIQAMYPAGSPPKDDDWTMETFLKAAEACHKAGVPFGIGLGETSDSVDSAGAFFQA HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHH FGAQLVDAKGNVTVKTDEVRQVLEFYKKLMAFLPADVTAWDDSSNNKWIVSGRGAMIMNP HCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCEEEECC PSAWAVAKRDAPQVAEQLWTHGFPKGPKGRYAPFLPFFWTTWTFSKNKEAAKSLLRHLSQ CCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHCCC PDSIEKLVAASGGYDLPAFANLTKLKVWADQAPPTGTLFSYPDPYQRQTLSIAASPAPPK CHHHHHHHHCCCCCCCCHHCCCEEEEEEECCCCCCCCCCCCCCCHHCCEEEEECCCCCHH IAQQIYAQATLTKMCVRHYQGEAMEKTLAWAEGECEGFMRS HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCC >Mature Secondary Structure SDDAVSPAARSLAAQSRTKLSRRQFVAATAITSAALVTAPYVRGAHAAGKLTMGFWDHW CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHC VPGANNTCTELVKQWGEKEKVEVSIDYIPSQGNKNLLTIAAEAQAKSGHDILSMPTWWPH CCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCC ANAELIEPVNDLMEDLIKQNGKVNNTVEYLAKRDGKWLAVPSCIGSQIKGPCTRIDLLKK CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECHHHCCCCCCCHHHHHHHHH HANIDIQAMYPAGSPPKDDDWTMETFLKAAEACHKAGVPFGIGLGETSDSVDSAGAFFQA HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHH FGAQLVDAKGNVTVKTDEVRQVLEFYKKLMAFLPADVTAWDDSSNNKWIVSGRGAMIMNP HCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCEEEECC PSAWAVAKRDAPQVAEQLWTHGFPKGPKGRYAPFLPFFWTTWTFSKNKEAAKSLLRHLSQ CCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHCCC PDSIEKLVAASGGYDLPAFANLTKLKVWADQAPPTGTLFSYPDPYQRQTLSIAASPAPPK CHHHHHHHHCCCCCCCCHHCCCEEEEEEECCCCCCCCCCCCCCCHHCCEEEEECCCCCHH IAQQIYAQATLTKMCVRHYQGEAMEKTLAWAEGECEGFMRS HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA