| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is xseA [H]
Identifier: 86748982
GI number: 86748982
Start: 2123791
End: 2125407
Strand: Reverse
Name: xseA [H]
Synonym: RPB_1859
Alternate gene names: 86748982
Gene position: 2125407-2123791 (Counterclockwise)
Preceding gene: 86748992
Following gene: 86748980
Centisome position: 39.86
GC content: 70.38
Gene sequence:
>1617_bases ATGGCCCGACTGCTCGCCCCCGAAACCCTCGCCAATGTCGGTGAATTCACCGTCTCCGAGCTGTCGCAGGCGCTGAAGCG GACGGTGGAGGACAGCTATGGGCACGTCCGGGTGCGCGGCGAGATTTCCGGATTCCGCGGCGCGCATTCATCCGGGCACT GCTATTTCGCCCTGAAGGACGAGAGCGCCAAGATCGAGGCGGTGATCTGGAAGGGCGTCGCGGGGCGGATGCGGTTCAAG CCGCAGGAAGGCCTCGAGGTCATCGCCACCGGCAAGCTCACCACCTATCCCGGTTCGTCGAAATATCAGATCGTGATCGA GGCGCTGGAGCCCGCCGGCGTCGGCGCGCTGATGGCGCTGATGGAAGAGCGCAAGCGCAAGCTCGGCGCCGAAGGGCTGT TCGACGAAGCGCGCAAGCAATTGTTGCCGTATCTGCCCGAGGTGATCGGCGTCGTCACCTCCCCCACCGGCGCGGTGATC CGCGACATCCTGCATCGGCTCGAAGACCGCTTCCCGCGCCGCGTGCTGGTGTGGCCGGTGAAGGTGCAGGGCGAAGGCTC GGCCGAACAGGTCGCCGCCGCGATCCACGGCTTCAACGCGCTGCCCGAAGGCGGCCCGATCCCGCGCCCCGACCTGCTGA TCGTCGCGCGCGGCGGCGGTTCGCTGGAGGATCTGTGGTCGTTCAACGAGGAGATCGTTGTCCGCGCCGCGGCCGAAAGC ATGATCCCGCTGATCTCTGCGGTCGGCCACGAAACCGACGTGACGCTGATCGATTTCGCCGCAGACAAGCGCGCGCCGAC GCCGACCGCCGCTGCCGAAATGGCGGTGCCGGTCCGCGCCGAATTGTTCGTCGAGGTGCAGAGCTACGCGCGGCGGATGA TGCTGTGCTGGTCGCGTGGCCAGGATTCACGCCGCAACGAACTACGCGCTGCCGCCCGCGCGCTGCCCGCTGCGGGCGAA CTGCTCGCGATCCCGCGGCAGCGGCTCGACGGCGCGGCGTCGTCCCTGCCCCGCGCGCTGCGCGCCAACACCCACGCCCA TCACCGCCGCTACGCCAAGGCCGCGTCGGGCATCACGCTGAATGTGCTGCGCGCCCAGGTCAGCCACAGCGCGCAGCGGC TCGGCAGCACCGGCGAGCGGCTGAAGCATTGCACCCGCGCCACGCTGCGCCATCGTCGCGACCGCTTCGAGAGTCTGGCG ATCCGGCTGCAGGCCTCGAAGCTCGCCAACGAGCAGGCGCAGCGGATGCGGATCGCGCGCGAGCGCGAGCGGATGCTGCG GCTCGCCGAGCGCGCCCGGCGGGCGTGGGCGACGCTGCGCGATCGCCAGCAGGCGCGCCTTGTTCAATCCGGCAAGCTGC TCACCGCCCTGTCGTATCGCGGCGTGCTGGCACGCGGCTTCGCGCTGGTGCGCGACGCCGACGGCCATGCGCTCCATGCG GCGGCGGCGGTCAGTGCGGGGGCGCGGCTCAGCGTCGAATTCGCCGACGGCCGCGTCGGCGTCACCGCCGATGGCGGCGG CGCGACGCGACCGGACATTGCCAAGCCCGCCACGCCAGCAGCGAAGCCGGCGCCGAAGCGGGTGTCGAAGCCGATCGATC AGGGCTCGCTGTTTTAG
Upstream 100 bases:
>100_bases ACAGAGAACTCTGTAATACAGAGTATTTCGCTCAGCAAGGGTTGATTGGCGAGCGGGACGCAAATCCCTAATTTGCCGGC GAACCAGGATACCGAATCGC
Downstream 100 bases:
>100_bases AACTCCGGCCGGCCTGCGCTCTACCGTCCCAGCCAGTGCATCACCCGCCGCTCGGCGTCATTGCGTGCGCCCGCATCGAA GCCGAGATGGCCTTGCGCCG
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 538; Mature: 537
Protein sequence:
>538_residues MARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHSSGHCYFALKDESAKIEAVIWKGVAGRMRFK PQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGVGALMALMEERKRKLGAEGLFDEARKQLLPYLPEVIGVVTSPTGAVI RDILHRLEDRFPRRVLVWPVKVQGEGSAEQVAAAIHGFNALPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAES MIPLISAVGHETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSYARRMMLCWSRGQDSRRNELRAAARALPAAGE LLAIPRQRLDGAASSLPRALRANTHAHHRRYAKAASGITLNVLRAQVSHSAQRLGSTGERLKHCTRATLRHRRDRFESLA IRLQASKLANEQAQRMRIARERERMLRLAERARRAWATLRDRQQARLVQSGKLLTALSYRGVLARGFALVRDADGHALHA AAAVSAGARLSVEFADGRVGVTADGGGATRPDIAKPATPAAKPAPKRVSKPIDQGSLF
Sequences:
>Translated_538_residues MARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHSSGHCYFALKDESAKIEAVIWKGVAGRMRFK PQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGVGALMALMEERKRKLGAEGLFDEARKQLLPYLPEVIGVVTSPTGAVI RDILHRLEDRFPRRVLVWPVKVQGEGSAEQVAAAIHGFNALPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAES MIPLISAVGHETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSYARRMMLCWSRGQDSRRNELRAAARALPAAGE LLAIPRQRLDGAASSLPRALRANTHAHHRRYAKAASGITLNVLRAQVSHSAQRLGSTGERLKHCTRATLRHRRDRFESLA IRLQASKLANEQAQRMRIARERERMLRLAERARRAWATLRDRQQARLVQSGKLLTALSYRGVLARGFALVRDADGHALHA AAAVSAGARLSVEFADGRVGVTADGGGATRPDIAKPATPAAKPAPKRVSKPIDQGSLF >Mature_537_residues ARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHSSGHCYFALKDESAKIEAVIWKGVAGRMRFKP QEGLEVIATGKLTTYPGSSKYQIVIEALEPAGVGALMALMEERKRKLGAEGLFDEARKQLLPYLPEVIGVVTSPTGAVIR DILHRLEDRFPRRVLVWPVKVQGEGSAEQVAAAIHGFNALPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAESM IPLISAVGHETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSYARRMMLCWSRGQDSRRNELRAAARALPAAGEL LAIPRQRLDGAASSLPRALRANTHAHHRRYAKAASGITLNVLRAQVSHSAQRLGSTGERLKHCTRATLRHRRDRFESLAI RLQASKLANEQAQRMRIARERERMLRLAERARRAWATLRDRQQARLVQSGKLLTALSYRGVLARGFALVRDADGHALHAA AAVSAGARLSVEFADGRVGVTADGGGATRPDIAKPATPAAKPAPKRVSKPIDQGSLF
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=493, Percent_Identity=35.9026369168357, Blast_Score=251, Evalue=7e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 58501; Mature: 58370
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHSSGHCYFALKD CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEEC ESAKIEAVIWKGVAGRMRFKPQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGVGALMAL CCCEEEEEEECCCCCCCCCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCHHHHHHH MEERKRKLGAEGLFDEARKQLLPYLPEVIGVVTSPTGAVIRDILHRLEDRFPRRVLVWPV HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEE KVQGEGSAEQVAAAIHGFNALPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAES EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHH MIPLISAVGHETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSYARRMMLCWSRG HHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC QDSRRNELRAAARALPAAGELLAIPRQRLDGAASSLPRALRANTHAHHRRYAKAASGITL CCHHHHHHHHHHHHCCCCCHHHHCCHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHCCCCH NVLRAQVSHSAQRLGSTGERLKHCTRATLRHRRDRFESLAIRLQASKLANEQAQRMRIAR HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERERMLRLAERARRAWATLRDRQQARLVQSGKLLTALSYRGVLARGFALVRDADGHALHA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCCEEHH AAAVSAGARLSVEFADGRVGVTADGGGATRPDIAKPATPAAKPAPKRVSKPIDQGSLF HHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC >Mature Secondary Structure ARLLAPETLANVGEFTVSELSQALKRTVEDSYGHVRVRGEISGFRGAHSSGHCYFALKD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEEC ESAKIEAVIWKGVAGRMRFKPQEGLEVIATGKLTTYPGSSKYQIVIEALEPAGVGALMAL CCCEEEEEEECCCCCCCCCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCHHHHHHH MEERKRKLGAEGLFDEARKQLLPYLPEVIGVVTSPTGAVIRDILHRLEDRFPRRVLVWPV HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEE KVQGEGSAEQVAAAIHGFNALPEGGPIPRPDLLIVARGGGSLEDLWSFNEEIVVRAAAES EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHH MIPLISAVGHETDVTLIDFAADKRAPTPTAAAEMAVPVRAELFVEVQSYARRMMLCWSRG HHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC QDSRRNELRAAARALPAAGELLAIPRQRLDGAASSLPRALRANTHAHHRRYAKAASGITL CCHHHHHHHHHHHHCCCCCHHHHCCHHHHCCHHHHCCHHHHCCCHHHHHHHHHHHCCCCH NVLRAQVSHSAQRLGSTGERLKHCTRATLRHRRDRFESLAIRLQASKLANEQAQRMRIAR HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERERMLRLAERARRAWATLRDRQQARLVQSGKLLTALSYRGVLARGFALVRDADGHALHA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCCEEHH AAAVSAGARLSVEFADGRVGVTADGGGATRPDIAKPATPAAKPAPKRVSKPIDQGSLF HHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]